Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4866

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
1,872,214	+				+0.8
1,872,215	-				+0.1
1,872,215	-				+0.5
1,872,215	-				-0.5
1,872,422	-		GFF4865	0.27	+0.7
1,872,422	-		GFF4865	0.27	+2.0
1,872,422	-		GFF4865	0.27	-0.3
1,872,422	-		GFF4865	0.27	+1.2
1,872,455	-		GFF4865	0.31	-0.1
1,872,455	-		GFF4865	0.31	+0.7
1,872,548	-		GFF4865	0.41	+0.5
1,872,737	-		GFF4865	0.63	-1.8
1,872,749	-		GFF4865	0.65	+0.3
1,873,307	-		GFF4866	0.22	-1.4
1,873,414	-		GFF4866	0.32	-0.8
1,873,414	-		GFF4866	0.32	-1.3
1,873,414	-		GFF4866	0.32	-0.9
1,873,489	-		GFF4866	0.38	-1.0
1,873,689	+		GFF4866	0.55	+0.1
1,873,690	-		GFF4866	0.56	-1.0
1,873,690	-		GFF4866	0.56	+0.8
1,873,690	-		GFF4866	0.56	-0.4
1,873,690	-		GFF4866	0.56	-0.8
1,873,690	-		GFF4866	0.56	-0.7
1,874,200	+				+0.9
1,874,200	+				+1.0
1,874,200	+				-0.3
1,874,200	+				-0.1
1,874,201	-				-0.4
1,874,201	-				-0.5
1,874,201	-				+0.5
1,874,218	+				-0.6
1,874,218	+				-2.1
1,874,219	-				+0.2
1,874,684	-				+0.0
1,874,700	+				+0.1
1,874,700	+				+0.2
1,874,700	+				+0.5
1,874,700	+				+0.6
1,874,700	+				+0.1
1,874,701	-				-0.3
1,874,701	-				-0.2
1,874,701	-				-0.4
1,874,856	+				-0.3
1,874,856	+				-0.5
1,874,856	+				-0.2
1,874,857	-				+0.6
1,874,857	-				-0.3
1,874,857	-				-0.6
1,874,857	-				-0.2
1,874,967	+		GFF4868	0.18	+0.1
1,874,968	-		GFF4868	0.18	+0.0
1,875,119	+		GFF4868	0.30	+0.2
1,875,120	-		GFF4868	0.31	+0.6
1,875,120	-		GFF4868	0.31	-2.0