Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4746

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
1,722,524	+		GFF4745	0.78	+0.7
1,722,524	+		GFF4745	0.78	+0.1
1,722,524	+		GFF4745	0.78	+0.5
1,722,525	-		GFF4745	0.78	-0.3
1,722,527	+		GFF4745	0.78	+0.2
1,722,581	+		GFF4745	0.80	-0.3
1,722,582	-		GFF4745	0.80	+0.0
1,722,971	+				-0.6
1,722,971	+				-0.3
1,722,971	+				-0.2
1,722,972	-				+0.0
1,722,972	-				-0.4
1,723,112	+				+0.9
1,723,113	-				+0.5
1,723,113	-				+0.3
1,723,257	+				-0.5
1,723,324	+				+0.2
1,723,324	+				-0.4
1,723,325	-				+0.8
1,723,582	+				+0.1
1,723,582	+				-0.8
1,723,583	-				-0.1
1,723,583	-				-0.1
1,723,940	-		GFF4746	0.11	+0.3
1,723,940	-		GFF4746	0.11	+0.2
1,723,940	-		GFF4746	0.11	-0.5
1,723,940	-		GFF4746	0.11	+0.4
1,723,940	-		GFF4746	0.11	+0.3
1,723,940	-		GFF4746	0.11	-0.1
1,723,984	+		GFF4746	0.11	-0.3
1,723,985	-		GFF4746	0.11	+0.4
1,724,377	+		GFF4746	0.17	-0.0
1,724,377	+		GFF4746	0.17	+0.4
1,724,378	-		GFF4746	0.17	+0.9
1,724,470	+		GFF4746	0.19	-0.3
1,724,624	-		GFF4746	0.21	+0.8
1,724,624	-		GFF4746	0.21	-0.2
1,725,853	+		GFF4746	0.40	-0.2
1,726,267	+		GFF4746	0.47	-0.5
1,726,291	+		GFF4746	0.47	-0.3
1,726,292	-		GFF4746	0.47	-0.0
1,726,381	+		GFF4746	0.48	+0.5
1,726,381	+		GFF4746	0.48	-0.1
1,726,381	+		GFF4746	0.48	-0.2
1,726,382	-		GFF4746	0.48	+0.1
1,726,382	-		GFF4746	0.48	+0.0
1,726,382	-		GFF4746	0.48	-0.5
1,726,382	-		GFF4746	0.48	-0.1
1,726,513	+		GFF4746	0.50	+0.3
1,726,514	-		GFF4746	0.50	-0.2
1,726,825	+		GFF4746	0.55	-0.1
1,727,008	+		GFF4746	0.58	+0.1
1,727,009	-		GFF4746	0.58	+0.2
1,727,104	+		GFF4746	0.60	+0.5
1,727,105	-		GFF4746	0.60	-0.1
1,727,327	-		GFF4746	0.63	+0.8
1,728,019	+		GFF4746	0.74	+1.3
1,728,020	-		GFF4746	0.74	+0.2
1,728,020	-		GFF4746	0.74	+0.1
1,728,253	+		GFF4746	0.77	-0.5
1,728,310	+		GFF4746	0.78	-0.5
1,728,310	+		GFF4746	0.78	+0.4
1,728,311	-		GFF4746	0.78	-2.0
1,728,311	-		GFF4746	0.78	+0.4
1,728,659	-		GFF4746	0.84	+0.0
1,728,727	+		GFF4746	0.85	-0.3
1,728,727	+		GFF4746	0.85	+0.1
1,728,727	+		GFF4746	0.85	+0.4
1,728,727	+		GFF4746	0.85	+0.5
1,728,727	+		GFF4746	0.85	+0.2
1,729,213	+				-0.3
1,729,213	+				-0.2
1,729,213	+				-0.3
1,729,213	+				+0.2
1,729,213	+				+0.2
1,729,213	+				+1.2
1,729,213	+				-0.3
1,729,214	-				-0.7
1,729,258	+				-0.2
1,729,498	+				+0.5
1,729,498	+				-0.3
1,729,499	-				-0.1
1,729,499	-				+0.3
1,729,499	-				-0.4
1,729,501	+				+0.4
1,729,502	-				+0.1
1,729,502	-				+0.0
1,729,502	-				+0.8
1,729,781	+				+0.5
1,729,782	-				+0.7
1,729,782	-				+0.5
1,729,925	+		GFF4747	0.13	-0.1
1,729,925	+		GFF4747	0.13	+0.4
1,729,925	+		GFF4747	0.13	-0.1
1,729,925	+		GFF4747	0.13	+1.1
1,729,926	-		GFF4747	0.13	+0.9
1,729,926	-		GFF4747	0.13	+0.7
1,729,978	-		GFF4747	0.19	+1.1
1,729,982	-		GFF4747	0.20	-0.7
1,730,000	+		GFF4747	0.22	+0.1
1,730,000	+		GFF4747	0.22	-0.9
1,730,001	-		GFF4747	0.22	-0.4
1,730,050	+		GFF4747	0.27	+0.5
1,730,051	-		GFF4747	0.27	+0.9
1,730,051	-		GFF4747	0.27	+1.1
1,730,158	+		GFF4747	0.39	-0.1
1,730,159	-		GFF4747	0.39	-0.4
1,730,159	-		GFF4747	0.39	+0.4
1,730,212	+		GFF4747	0.45	+0.1
1,730,212	+		GFF4747	0.45	-0.3
1,730,213	-		GFF4747	0.46	+0.1
1,730,246	-		GFF4747	0.49	-0.3
1,730,575	+		GFF4747	0.86	+0.1
1,730,606	-		GFF4747	0.89	+0.9