Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4341

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
1,269,285	+		GFF4339	0.30	+0.1
1,269,286	-		GFF4339	0.31	-0.1
1,269,286	-		GFF4339	0.31	-0.2
1,269,286	-		GFF4339	0.31	-0.1
1,269,533	-		GFF4339	0.63	-0.4
1,269,897	+		GFF4340	0.36	+0.4
1,269,897	+		GFF4340	0.36	+0.0
1,269,897	+		GFF4340	0.36	+0.3
1,269,897	+		GFF4340	0.36	+0.0
1,269,897	+		GFF4340	0.36	-0.0
1,269,897	+		GFF4340	0.36	-0.3
1,269,897	+		GFF4340	0.36	-0.2
1,269,897	+		GFF4340	0.36	-0.2
1,269,897	+		GFF4340	0.36	+0.2
1,269,897	+		GFF4340	0.36	-0.5
1,269,898	-		GFF4340	0.37	+0.1
1,269,898	-		GFF4340	0.37	-1.0
1,269,898	-		GFF4340	0.37	+0.7
1,269,898	-		GFF4340	0.37	-0.9
1,269,898	-		GFF4340	0.37	+0.1
1,269,898	-		GFF4340	0.37	+0.1
1,269,898	-		GFF4340	0.37	-0.5
1,269,898	-		GFF4340	0.37	+0.1
1,269,898	-		GFF4340	0.37	-0.2
1,270,068	+				-0.0
1,270,068	+				+0.3
1,270,068	+				-1.5
1,270,068	+				+0.3
1,270,068	+				-0.7
1,270,068	+				-0.2
1,270,068	+				+1.2
1,270,068	+				-1.4
1,270,068	-				-2.2
1,270,069	-				-0.6
1,270,069	-				-1.0
1,270,069	-				-1.3
1,270,069	-				-1.1
1,270,069	-				-1.4
1,270,069	-				-1.0
1,270,069	-				-1.6
1,270,069	-				-1.1
1,270,069	-				-0.9
1,270,069	-				-1.0
1,270,069	-				-1.9
1,270,104	+				+0.7
1,270,173	+				-1.0
1,270,173	+				-0.5
1,270,173	+				-1.0
1,270,173	+				-0.7
1,270,173	+				+0.3
1,270,173	+				-1.1
1,270,173	+				-0.3
1,270,173	+				-0.8
1,270,203	+				-2.9
1,270,203	+				-0.6
1,270,203	+				+0.6
1,270,203	+				-1.1
1,270,203	+				-1.6
1,270,203	+				-1.5
1,270,203	+				-0.5
1,270,203	+				-1.6
1,270,203	+				-0.3
1,270,204	-				-0.4
1,270,204	-				-1.0
1,270,379	+		GFF4341	0.33	-2.3
1,270,379	+		GFF4341	0.33	-1.4
1,270,379	+		GFF4341	0.33	-1.5
1,270,379	+		GFF4341	0.33	-1.6
1,270,466	+		GFF4341	0.47	-0.3
1,270,466	+		GFF4341	0.47	-0.4
1,270,466	+		GFF4341	0.47	-0.9
1,270,466	+		GFF4341	0.47	-1.3
1,270,466	+		GFF4341	0.47	-1.4
1,270,466	+		GFF4341	0.47	-1.4
1,270,466	+		GFF4341	0.47	-0.2
1,270,466	+		GFF4341	0.47	-0.6
1,270,466	+		GFF4341	0.47	-0.8
1,270,466	+		GFF4341	0.47	-0.4
1,270,811	+				-2.7