Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF399 and GFF400 overlap by 1 nucleotides GFF400 and GFF401 are separated by 186 nucleotides
GFF399 - PUTATIVE ZINC PROTEASE PROTEIN, at 66,630 to 67,718
GFF399
GFF400 - Anaerobic dehydrogenases, typically selenocysteine-containing, at 67,718 to 69,748
GFF400
GFF401 - Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A, at 69,935 to 71,152
GFF401
Position (kb) 67
68
69
70 Strain fitness (log2 ratio) -2
-1
0
1 at 66.733 kb on + strand at 66.733 kb on + strand at 66.733 kb on + strand at 66.733 kb on + strand at 66.734 kb on - strand at 66.734 kb on - strand at 66.734 kb on - strand at 66.800 kb on - strand, within GFF399 at 66.967 kb on + strand, within GFF399 at 66.967 kb on + strand, within GFF399 at 67.043 kb on - strand, within GFF399 at 67.151 kb on - strand, within GFF399 at 67.271 kb on - strand, within GFF399 at 67.286 kb on - strand, within GFF399 at 67.286 kb on - strand, within GFF399 at 67.351 kb on + strand, within GFF399 at 67.436 kb on - strand, within GFF399 at 67.466 kb on - strand, within GFF399 at 67.466 kb on - strand, within GFF399 at 67.474 kb on + strand, within GFF399 at 67.475 kb on - strand, within GFF399 at 67.475 kb on - strand, within GFF399 at 67.475 kb on - strand, within GFF399 at 67.642 kb on + strand at 67.642 kb on + strand at 67.642 kb on + strand at 67.643 kb on - strand at 67.645 kb on + strand at 67.761 kb on + strand at 67.761 kb on + strand at 67.761 kb on + strand at 67.762 kb on - strand at 68.443 kb on - strand, within GFF400 at 68.493 kb on + strand, within GFF400 at 68.493 kb on + strand, within GFF400 at 68.493 kb on + strand, within GFF400 at 68.494 kb on - strand, within GFF400 at 68.494 kb on - strand, within GFF400 at 68.494 kb on - strand, within GFF400 at 68.616 kb on + strand, within GFF400 at 68.617 kb on - strand, within GFF400 at 68.880 kb on + strand, within GFF400 at 68.917 kb on - strand, within GFF400 at 69.040 kb on - strand, within GFF400 at 69.439 kb on - strand, within GFF400 at 69.444 kb on + strand, within GFF400 at 69.594 kb on + strand at 69.594 kb on + strand at 69.594 kb on + strand at 69.595 kb on - strand at 69.813 kb on + strand at 69.813 kb on + strand at 69.814 kb on - strand at 69.814 kb on - strand at 69.885 kb on - strand at 70.325 kb on + strand, within GFF401 at 70.326 kb on - strand, within GFF401 at 70.326 kb on - strand, within GFF401 at 70.428 kb on - strand, within GFF401 at 70.727 kb on + strand, within GFF401 at 70.727 kb on + strand, within GFF401 at 70.727 kb on + strand, within GFF401 at 70.727 kb on + strand, within GFF401 at 70.728 kb on - strand, within GFF401 at 70.728 kb on - strand, within GFF401
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 66,733 + -0.4 66,733 + -0.0 66,733 + -0.4 66,733 + -0.3 66,734 - +0.6 66,734 - +0.7 66,734 - +0.0 66,800 - GFF399 0.16 +0.1 66,967 + GFF399 0.31 +0.5 66,967 + GFF399 0.31 -0.4 67,043 - GFF399 0.38 +0.5 67,151 - GFF399 0.48 +0.9 67,271 - GFF399 0.59 +0.1 67,286 - GFF399 0.60 +0.1 67,286 - GFF399 0.60 +1.0 67,351 + GFF399 0.66 +0.2 67,436 - GFF399 0.74 -1.0 67,466 - GFF399 0.77 -1.3 67,466 - GFF399 0.77 -0.4 67,474 + GFF399 0.78 +0.5 67,475 - GFF399 0.78 -1.3 67,475 - GFF399 0.78 -0.1 67,475 - GFF399 0.78 -0.1 67,642 + -0.3 67,642 + +0.0 67,642 + -1.1 67,643 - -0.2 67,645 + -0.3 67,761 + -1.3 67,761 + +0.6 67,761 + +0.3 67,762 - -0.0 68,443 - GFF400 0.36 -0.1 68,493 + GFF400 0.38 -0.4 68,493 + GFF400 0.38 -0.3 68,493 + GFF400 0.38 -0.3 68,494 - GFF400 0.38 +0.1 68,494 - GFF400 0.38 -0.6 68,494 - GFF400 0.38 -0.4 68,616 + GFF400 0.44 -0.1 68,617 - GFF400 0.44 +1.0 68,880 + GFF400 0.57 +0.1 68,917 - GFF400 0.59 -0.4 69,040 - GFF400 0.65 +0.0 69,439 - GFF400 0.85 -0.3 69,444 + GFF400 0.85 +0.1 69,594 + +0.3 69,594 + -0.4 69,594 + +0.8 69,595 - -0.6 69,813 + +0.1 69,813 + -0.1 69,814 - -0.3 69,814 - -0.2 69,885 - +0.2 70,325 + GFF401 0.32 +0.4 70,326 - GFF401 0.32 -1.3 70,326 - GFF401 0.32 -0.0 70,428 - GFF401 0.40 -0.2 70,727 + GFF401 0.65 -0.5 70,727 + GFF401 0.65 +1.7 70,727 + GFF401 0.65 -0.5 70,727 + GFF401 0.65 -0.7 70,728 - GFF401 0.65 -1.8 70,728 - GFF401 0.65 -0.1
Or see this region's nucleotide sequence