Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3799

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
698,539	+		GFF3798	0.39	-0.8
698,556	+		GFF3798	0.41	+0.0
698,557	-		GFF3798	0.41	-1.2
698,621	-		GFF3798	0.47	-0.3
698,630	-		GFF3798	0.48	-0.3
698,647	+		GFF3798	0.50	-0.0
698,648	-		GFF3798	0.50	-0.2
698,716	+		GFF3798	0.57	-1.1
698,717	-		GFF3798	0.57	-0.5
698,824	+		GFF3798	0.67	+2.1
698,825	-		GFF3798	0.67	-1.0
698,825	-		GFF3798	0.67	-0.4
699,031	+		GFF3798	0.87	-0.6
699,032	-		GFF3798	0.87	-1.3
699,034	+		GFF3798	0.87	-0.5
699,035	-		GFF3798	0.87	-2.3
699,035	-		GFF3798	0.87	-0.2
699,052	+		GFF3798	0.89	-1.0
699,053	-		GFF3798	0.89	-0.8
699,053	-		GFF3798	0.89	+1.2
699,055	-		GFF3798	0.89	-1.3
699,100	+				-0.8
699,101	-				-0.3
699,101	-				-1.4
699,101	-				-1.3
699,163	+				-0.8
699,164	-				-0.9
699,179	+				+2.3
699,179	+				-0.7
699,179	+				-0.4
699,179	+				+0.3
699,179	+				-0.6
699,180	-				-0.7
699,303	-		GFF3799	0.19	-0.6
699,303	-		GFF3799	0.19	+0.2
699,317	+		GFF3799	0.21	+0.6
699,318	-		GFF3799	0.21	-0.7
699,318	-		GFF3799	0.21	-1.5
699,459	-		GFF3799	0.41	-2.4
699,810	-				-0.8
699,810	-				-0.7
699,810	-				-0.5
699,848	+				-0.5
699,848	+				-2.1
699,849	-				-1.1
699,849	-				-0.7
699,849	-				-1.3
699,849	-				-1.8
699,849	-				-0.5
700,032	-		GFF3800	0.17	-1.6
700,032	-		GFF3800	0.17	-2.7
700,064	+		GFF3800	0.21	-1.0
700,355	+		GFF3800	0.52	-0.1
700,356	-		GFF3800	0.52	-0.3
700,356	-		GFF3800	0.52	-2.1