Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3702

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3701 and GFF3702 are separated by 204 nucleotidesGFF3702 and GFF3703 overlap by 1 nucleotides GFF3701 - Zn-dependent protease with chaperone function, at 592,165 to 593,235 GFF3701 GFF3702 - AttH component of AttEFGH ABC transport system, at 593,440 to 594,570 GFF3702 GFF3703 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 594,570 to 597,122 GFF3703 Position (kb) 593 594 595Strain fitness (log2 ratio) -1 0 1at 592.690 kb on + strand, within GFF3701at 592.691 kb on - strand, within GFF3701at 592.888 kb on - strand, within GFF3701at 592.888 kb on - strand, within GFF3701at 592.991 kb on - strand, within GFF3701at 593.462 kb on + strandat 593.462 kb on + strandat 593.462 kb on + strandat 593.462 kb on + strandat 593.463 kb on - strandat 593.538 kb on - strandat 593.538 kb on - strandat 593.975 kb on + strand, within GFF3702at 593.976 kb on - strand, within GFF3702at 593.976 kb on - strand, within GFF3702at 594.102 kb on - strand, within GFF3702at 594.401 kb on + strand, within GFF3702at 594.401 kb on + strand, within GFF3702at 594.402 kb on - strand, within GFF3702at 595.330 kb on + strand, within GFF3703at 595.331 kb on - strand, within GFF3703

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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592,690 + GFF3701 0.49 +0.3
592,691 - GFF3701 0.49 -1.1
592,888 - GFF3701 0.68 -0.1
592,888 - GFF3701 0.68 -0.2
592,991 - GFF3701 0.77 +0.2
593,462 + -0.7
593,462 + +0.0
593,462 + -0.4
593,462 + -0.3
593,463 - +0.0
593,538 - -0.2
593,538 - +0.1
593,975 + GFF3702 0.47 +0.3
593,976 - GFF3702 0.47 +0.1
593,976 - GFF3702 0.47 +0.4
594,102 - GFF3702 0.59 +0.6
594,401 + GFF3702 0.85 -0.9
594,401 + GFF3702 0.85 +0.2
594,402 - GFF3702 0.85 +0.7
595,330 + GFF3703 0.30 -0.1
595,331 - GFF3703 0.30 +0.4

Or see this region's nucleotide sequence