Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3573

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3571 and GFF3572 are separated by 109 nucleotidesGFF3572 and GFF3573 are separated by 24 nucleotidesGFF3573 and GFF3574 are separated by 43 nucleotides GFF3571 - Probable transmembrane protein, at 459,664 to 460,134 GFF3571 GFF3572 - protein of unknown function DUF1332, at 460,244 to 460,735 GFF3572 GFF3573 - SAM-dependent methyltransferase (EC 2.1.1.-), at 460,760 to 461,374 GFF3573 GFF3574 - hypothetical protein, at 461,418 to 462,638 GFF3574 Position (kb) 460 461 462Strain fitness (log2 ratio) -1 0 1at 459.764 kb on + strand, within GFF3571at 459.765 kb on - strand, within GFF3571at 459.765 kb on - strand, within GFF3571at 459.797 kb on + strand, within GFF3571at 459.797 kb on + strand, within GFF3571at 459.798 kb on - strand, within GFF3571at 459.798 kb on - strand, within GFF3571at 459.827 kb on + strand, within GFF3571at 459.863 kb on + strand, within GFF3571at 459.863 kb on + strand, within GFF3571at 459.864 kb on - strand, within GFF3571at 459.864 kb on - strand, within GFF3571at 459.864 kb on - strand, within GFF3571at 459.865 kb on + strand, within GFF3571at 459.866 kb on + strand, within GFF3571at 459.866 kb on + strand, within GFF3571at 459.867 kb on - strand, within GFF3571at 459.867 kb on - strand, within GFF3571at 459.867 kb on - strand, within GFF3571at 459.869 kb on + strand, within GFF3571at 459.869 kb on + strand, within GFF3571at 459.870 kb on - strand, within GFF3571at 459.870 kb on - strand, within GFF3571at 459.870 kb on - strand, within GFF3571at 459.879 kb on - strand, within GFF3571at 459.879 kb on - strand, within GFF3571at 459.984 kb on - strand, within GFF3571at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.303 kb on - strand, within GFF3572at 460.474 kb on - strand, within GFF3572at 460.953 kb on + strand, within GFF3573at 460.962 kb on + strand, within GFF3573at 460.963 kb on - strand, within GFF3573at 460.963 kb on - strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.818 kb on + strand, within GFF3574at 461.833 kb on + strand, within GFF3574at 461.833 kb on + strand, within GFF3574at 461.834 kb on - strand, within GFF3574at 461.834 kb on - strand, within GFF3574at 461.834 kb on - strand, within GFF3574at 461.834 kb on - strand, within GFF3574at 462.097 kb on + strand, within GFF3574at 462.098 kb on - strand, within GFF3574at 462.098 kb on - strand, within GFF3574at 462.339 kb on + strand, within GFF3574at 462.339 kb on + strand, within GFF3574at 462.339 kb on + strand, within GFF3574at 462.340 kb on - strand, within GFF3574

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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459,764 + GFF3571 0.21 -0.5
459,765 - GFF3571 0.21 -0.3
459,765 - GFF3571 0.21 +0.2
459,797 + GFF3571 0.28 +0.2
459,797 + GFF3571 0.28 +0.6
459,798 - GFF3571 0.28 +0.4
459,798 - GFF3571 0.28 +1.1
459,827 + GFF3571 0.35 -0.2
459,863 + GFF3571 0.42 +0.3
459,863 + GFF3571 0.42 +0.3
459,864 - GFF3571 0.42 +0.1
459,864 - GFF3571 0.42 -0.4
459,864 - GFF3571 0.42 -1.1
459,865 + GFF3571 0.43 +0.5
459,866 + GFF3571 0.43 +0.5
459,866 + GFF3571 0.43 +0.9
459,867 - GFF3571 0.43 -0.1
459,867 - GFF3571 0.43 -0.7
459,867 - GFF3571 0.43 -0.7
459,869 + GFF3571 0.44 -0.1
459,869 + GFF3571 0.44 -0.1
459,870 - GFF3571 0.44 +0.3
459,870 - GFF3571 0.44 -0.2
459,870 - GFF3571 0.44 +0.2
459,879 - GFF3571 0.46 -0.2
459,879 - GFF3571 0.46 +0.9
459,984 - GFF3571 0.68 -0.3
460,302 + GFF3572 0.12 +1.0
460,302 + GFF3572 0.12 +0.3
460,302 + GFF3572 0.12 -1.6
460,302 + GFF3572 0.12 -0.0
460,302 + GFF3572 0.12 +0.2
460,302 + GFF3572 0.12 +0.1
460,303 - GFF3572 0.12 -0.4
460,474 - GFF3572 0.47 +0.1
460,953 + GFF3573 0.31 +0.1
460,962 + GFF3573 0.33 -0.3
460,963 - GFF3573 0.33 -0.1
460,963 - GFF3573 0.33 +0.3
461,061 + GFF3573 0.49 +0.2
461,061 + GFF3573 0.49 -0.1
461,061 + GFF3573 0.49 +0.8
461,061 + GFF3573 0.49 +0.6
461,061 + GFF3573 0.49 +0.3
461,062 - GFF3573 0.49 -0.4
461,062 - GFF3573 0.49 -0.6
461,062 - GFF3573 0.49 +0.3
461,062 - GFF3573 0.49 -0.5
461,062 - GFF3573 0.49 -0.3
461,062 - GFF3573 0.49 -0.8
461,818 + GFF3574 0.33 +0.0
461,833 + GFF3574 0.34 -0.1
461,833 + GFF3574 0.34 +0.8
461,834 - GFF3574 0.34 +0.3
461,834 - GFF3574 0.34 +0.9
461,834 - GFF3574 0.34 +0.8
461,834 - GFF3574 0.34 -0.6
462,097 + GFF3574 0.56 -0.7
462,098 - GFF3574 0.56 -0.4
462,098 - GFF3574 0.56 -0.1
462,339 + GFF3574 0.75 +0.6
462,339 + GFF3574 0.75 -0.2
462,339 + GFF3574 0.75 -0.9
462,340 - GFF3574 0.76 +0.2

Or see this region's nucleotide sequence