Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3562

Experiment: Ying_Others16 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3561 and GFF3562 are separated by 64 nucleotidesGFF3562 and GFF3563 overlap by 23 nucleotidesGFF3563 and GFF3564 are separated by 103 nucleotides GFF3561 - Glutamate--cysteine ligase (EC 6.3.2.2), at 452,336 to 453,895 GFF3561 GFF3562 - Dienelactone hydrolase family, at 453,960 to 454,886 GFF3562 GFF3563 - NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 454,864 to 455,499 GFF3563 GFF3564 - Transcriptional regulator, TetR family, at 455,603 to 456,184 GFF3564 Position (kb) 453 454 455Strain fitness (log2 ratio) -2 -1 0 1at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.961 kb on - strand, within GFF3561at 452.961 kb on - strand, within GFF3561at 453.038 kb on + strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.101 kb on + strand, within GFF3561at 453.101 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.138 kb on - strand, within GFF3561at 453.182 kb on + strand, within GFF3561at 453.182 kb on + strand, within GFF3561at 453.183 kb on - strand, within GFF3561at 453.213 kb on - strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.261 kb on - strand, within GFF3561at 453.261 kb on - strand, within GFF3561at 453.750 kb on - strandat 453.824 kb on + strandat 453.825 kb on - strandat 453.836 kb on + strandat 453.836 kb on + strandat 453.836 kb on + strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.908 kb on - strandat 453.908 kb on - strandat 453.908 kb on - strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 454.047 kb on + strandat 454.047 kb on + strandat 454.047 kb on + strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.200 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.371 kb on + strand, within GFF3562at 454.372 kb on - strand, within GFF3562at 454.554 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.618 kb on - strand, within GFF3562at 454.621 kb on - strand, within GFF3562at 454.621 kb on - strand, within GFF3562at 454.722 kb on + strand, within GFF3562at 454.722 kb on + strand, within GFF3562at 454.723 kb on - strand, within GFF3562at 454.723 kb on - strand, within GFF3562at 454.755 kb on + strand, within GFF3562at 454.755 kb on + strand, within GFF3562at 455.084 kb on + strand, within GFF3563at 455.084 kb on + strand, within GFF3563at 455.084 kb on + strand, within GFF3563at 455.085 kb on - strand, within GFF3563at 455.331 kb on - strand, within GFF3563at 455.529 kb on + strandat 455.530 kb on - strandat 455.530 kb on - strandat 455.530 kb on - strandat 455.544 kb on - strandat 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.754 kb on - strand, within GFF3564at 455.804 kb on + strand, within GFF3564at 455.804 kb on + strand, within GFF3564at 455.805 kb on - strand, within GFF3564

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
remove
452,960 + GFF3561 0.40 -0.9
452,960 + GFF3561 0.40 -0.3
452,960 + GFF3561 0.40 -1.0
452,960 + GFF3561 0.40 -0.7
452,960 + GFF3561 0.40 -0.4
452,960 + GFF3561 0.40 -0.1
452,960 + GFF3561 0.40 +0.3
452,960 + GFF3561 0.40 -0.8
452,961 - GFF3561 0.40 -1.8
452,961 - GFF3561 0.40 -0.2
453,038 + GFF3561 0.45 -0.6
453,039 - GFF3561 0.45 -1.4
453,039 - GFF3561 0.45 -1.8
453,039 - GFF3561 0.45 -0.0
453,039 - GFF3561 0.45 -0.9
453,039 - GFF3561 0.45 -0.9
453,101 + GFF3561 0.49 -0.3
453,101 + GFF3561 0.49 -0.3
453,137 + GFF3561 0.51 +0.5
453,137 + GFF3561 0.51 +0.2
453,137 + GFF3561 0.51 -0.5
453,138 - GFF3561 0.51 -0.3
453,182 + GFF3561 0.54 -0.7
453,182 + GFF3561 0.54 -0.5
453,183 - GFF3561 0.54 -0.4
453,213 - GFF3561 0.56 -0.3
453,260 + GFF3561 0.59 +1.7
453,260 + GFF3561 0.59 -0.4
453,260 + GFF3561 0.59 -0.8
453,261 - GFF3561 0.59 -0.9
453,261 - GFF3561 0.59 -0.6
453,750 - +0.3
453,824 + -1.5
453,825 - -0.3
453,836 + -1.5
453,836 + -0.1
453,836 + -0.1
453,837 - -0.5
453,837 - +0.4
453,837 - +1.1
453,837 - +0.3
453,837 - +0.7
453,837 - +0.3
453,837 - +1.0
453,908 - +0.6
453,908 - -0.0
453,908 - -0.3
453,959 + -1.3
453,959 + -0.9
453,959 + -0.3
453,959 + -0.0
453,959 + +0.8
453,959 + -0.3
453,959 + -0.4
453,960 - +0.9
453,960 - +0.3
453,960 - +1.3
453,960 - -0.2
453,960 - -0.1
453,960 - -0.3
453,960 - +1.5
453,960 - +0.1
453,960 - -2.1
453,960 - -0.3
453,960 - +0.6
454,047 + +0.2
454,047 + +0.2
454,047 + +0.4
454,048 - +0.2
454,048 - -0.1
454,048 - -0.7
454,048 - +0.2
454,048 - +0.6
454,200 + GFF3562 0.26 -0.1
454,248 + GFF3562 0.31 -0.9
454,248 + GFF3562 0.31 +1.2
454,248 + GFF3562 0.31 -0.6
454,248 + GFF3562 0.31 +0.0
454,248 + GFF3562 0.31 -0.3
454,249 - GFF3562 0.31 +0.2
454,249 - GFF3562 0.31 -0.1
454,249 - GFF3562 0.31 +0.0
454,371 + GFF3562 0.44 -0.1
454,372 - GFF3562 0.44 +0.7
454,554 + GFF3562 0.64 +0.1
454,617 + GFF3562 0.71 -0.1
454,617 + GFF3562 0.71 -1.8
454,617 + GFF3562 0.71 -0.3
454,618 - GFF3562 0.71 +0.2
454,621 - GFF3562 0.71 -0.1
454,621 - GFF3562 0.71 +0.1
454,722 + GFF3562 0.82 +0.6
454,722 + GFF3562 0.82 -0.0
454,723 - GFF3562 0.82 -0.5
454,723 - GFF3562 0.82 +0.0
454,755 + GFF3562 0.86 +0.8
454,755 + GFF3562 0.86 -0.1
455,084 + GFF3563 0.35 -0.6
455,084 + GFF3563 0.35 -0.1
455,084 + GFF3563 0.35 -1.1
455,085 - GFF3563 0.35 -0.6
455,331 - GFF3563 0.73 +0.6
455,529 + -0.4
455,530 - +0.2
455,530 - +0.4
455,530 - +0.4
455,544 - +0.2
455,753 + GFF3564 0.26 -0.3
455,753 + GFF3564 0.26 +0.2
455,753 + GFF3564 0.26 -0.2
455,753 + GFF3564 0.26 +0.2
455,753 + GFF3564 0.26 -0.2
455,753 + GFF3564 0.26 +0.1
455,754 - GFF3564 0.26 -1.0
455,804 + GFF3564 0.35 +0.3
455,804 + GFF3564 0.35 -0.8
455,805 - GFF3564 0.35 +0.4

Or see this region's nucleotide sequence