Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3542 and GFF3543 are separated by 11 nucleotides GFF3543 and GFF3544 are separated by 3 nucleotides GFF3544 and GFF3545 are separated by 15 nucleotides GFF3545 and GFF3546 are separated by 18 nucleotides
GFF3542 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 432,935 to 433,993
GFF3542
GFF3543 - hypothetical protein, at 434,005 to 434,151
GFF3543
GFF3544 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 434,155 to 435,891
GFF3544
GFF3545 - Iron-uptake factor PiuC, at 435,907 to 436,587
GFF3545
GFF3546 - Ferrichrome-iron receptor, at 436,606 to 438,816
GFF3546
Position (kb) 434
435
436 Strain fitness (log2 ratio) -1
0
1 at 433.335 kb on + strand, within GFF3542 at 433.335 kb on + strand, within GFF3542 at 433.336 kb on - strand, within GFF3542 at 433.624 kb on - strand, within GFF3542 at 434.028 kb on + strand, within GFF3543 at 434.029 kb on - strand, within GFF3543 at 434.030 kb on - strand, within GFF3543 at 434.119 kb on - strand, within GFF3543 at 434.119 kb on - strand, within GFF3543 at 434.344 kb on + strand, within GFF3544 at 434.344 kb on + strand, within GFF3544 at 434.536 kb on + strand, within GFF3544 at 434.537 kb on - strand, within GFF3544 at 434.537 kb on - strand, within GFF3544 at 434.656 kb on + strand, within GFF3544 at 434.837 kb on - strand, within GFF3544 at 435.010 kb on + strand, within GFF3544 at 435.011 kb on - strand, within GFF3544 at 435.011 kb on - strand, within GFF3544 at 435.011 kb on - strand, within GFF3544 at 435.011 kb on - strand, within GFF3544 at 435.233 kb on - strand, within GFF3544 at 435.256 kb on + strand, within GFF3544 at 435.257 kb on - strand, within GFF3544 at 435.257 kb on - strand, within GFF3544 at 435.538 kb on + strand, within GFF3544 at 435.539 kb on - strand, within GFF3544 at 435.541 kb on + strand, within GFF3544 at 435.541 kb on + strand, within GFF3544 at 435.541 kb on + strand, within GFF3544 at 435.542 kb on - strand, within GFF3544 at 435.542 kb on - strand, within GFF3544 at 435.542 kb on - strand, within GFF3544 at 435.778 kb on + strand at 435.779 kb on - strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.942 kb on - strand at 436.079 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.311 kb on - strand, within GFF3545 at 436.610 kb on + strand at 436.611 kb on - strand at 436.611 kb on - strand at 436.615 kb on + strand at 436.661 kb on + strand at 436.662 kb on - strand at 436.685 kb on + strand at 436.685 kb on + strand at 436.689 kb on - strand at 436.689 kb on - strand at 436.689 kb on - strand at 436.709 kb on + strand at 436.709 kb on + strand at 436.766 kb on + strand at 436.775 kb on + strand at 436.826 kb on + strand at 436.854 kb on - strand, within GFF3546 at 436.854 kb on - strand, within GFF3546
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 433,335 + GFF3542 0.38 +0.8 433,335 + GFF3542 0.38 +1.6 433,336 - GFF3542 0.38 -0.4 433,624 - GFF3542 0.65 +0.3 434,028 + GFF3543 0.16 -0.2 434,029 - GFF3543 0.16 -0.3 434,030 - GFF3543 0.17 +0.2 434,119 - GFF3543 0.78 +1.7 434,119 - GFF3543 0.78 +0.0 434,344 + GFF3544 0.11 +0.8 434,344 + GFF3544 0.11 +1.1 434,536 + GFF3544 0.22 +0.7 434,537 - GFF3544 0.22 +0.7 434,537 - GFF3544 0.22 +0.3 434,656 + GFF3544 0.29 +0.4 434,837 - GFF3544 0.39 +1.1 435,010 + GFF3544 0.49 +0.2 435,011 - GFF3544 0.49 -0.1 435,011 - GFF3544 0.49 +0.1 435,011 - GFF3544 0.49 +0.0 435,011 - GFF3544 0.49 +0.1 435,233 - GFF3544 0.62 +0.5 435,256 + GFF3544 0.63 +0.1 435,257 - GFF3544 0.63 -0.2 435,257 - GFF3544 0.63 -0.2 435,538 + GFF3544 0.80 +0.8 435,539 - GFF3544 0.80 -0.2 435,541 + GFF3544 0.80 +0.3 435,541 + GFF3544 0.80 -0.3 435,541 + GFF3544 0.80 +1.3 435,542 - GFF3544 0.80 -0.4 435,542 - GFF3544 0.80 +0.9 435,542 - GFF3544 0.80 +0.1 435,778 + -0.0 435,779 - -1.0 435,941 + -0.1 435,941 + +0.2 435,941 + -0.1 435,941 + -0.0 435,941 + -0.3 435,942 - -1.4 436,079 + GFF3545 0.25 -0.0 436,310 + GFF3545 0.59 +0.9 436,310 + GFF3545 0.59 +0.5 436,310 + GFF3545 0.59 +1.0 436,311 - GFF3545 0.59 -1.0 436,610 + -0.0 436,611 - +0.4 436,611 - +0.3 436,615 + -0.5 436,661 + +0.1 436,662 - +0.4 436,685 + -1.2 436,685 + -0.3 436,689 - -0.3 436,689 - +0.6 436,689 - -0.3 436,709 + +0.0 436,709 + -1.0 436,766 + +0.2 436,775 + -0.4 436,826 + +0.6 436,854 - GFF3546 0.11 +0.7 436,854 - GFF3546 0.11 -0.6
Or see this region's nucleotide sequence