Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3459

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
338,936	-				-0.1
338,936	-				-0.3
339,335	-		GFF3458	0.42	-0.5
339,481	+		GFF3458	0.58	-0.7
339,482	-		GFF3458	0.58	-0.1
339,769	-		GFF3458	0.88	-0.3
339,769	-		GFF3458	0.88	-0.2
339,769	-		GFF3458	0.88	-0.2
339,769	-		GFF3458	0.88	+0.7
339,769	-		GFF3458	0.88	+0.8
339,791	+				-0.4
339,792	-				+0.9
339,891	+		GFF3459	0.82	+0.0
339,927	-				+0.6
340,060	+				+0.0
340,060	+				+0.2
340,238	-		GFF3460	0.20	-1.5
340,667	-		GFF3460	0.46	+0.7