Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF341

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
1,651	-		GFF340	0.51	-0.2
1,725	+		GFF340	0.55	+0.5
1,726	-		GFF340	0.55	+0.2
1,726	-		GFF340	0.55	+0.6
1,797	+		GFF340	0.60	+0.5
1,798	-		GFF340	0.60	+0.3
1,798	-		GFF340	0.60	-0.0
1,968	+		GFF340	0.70	+0.7
1,968	+		GFF340	0.70	-0.7
1,969	-		GFF340	0.70	+0.4
1,969	-		GFF340	0.70	+1.0
1,969	-		GFF340	0.70	-0.2
1,970	+		GFF340	0.70	+0.3
1,971	+		GFF340	0.70	+0.3
1,972	-		GFF340	0.70	-0.2
2,061	+		GFF340	0.76	-0.3
2,061	+		GFF340	0.76	+1.1
2,101	-		GFF340	0.78	-0.3
2,101	-		GFF340	0.78	-0.4
2,349	+				-0.1
2,350	-				+0.1
2,377	-				-0.1
2,379	+				+0.9
2,379	+				+0.1
2,379	+				-0.1
2,380	-				-0.1
2,380	-				-0.4
3,004	+				-0.5
3,004	+				+0.4
3,005	-				-2.1
3,061	+				-0.1
3,061	+				-0.9
3,285	-		GFF342	0.27	+0.2
3,413	+		GFF342	0.44	-0.0
3,413	+		GFF342	0.44	-0.4
3,414	-		GFF342	0.44	+0.1
3,419	+		GFF342	0.45	-0.8
3,683	+		GFF342	0.81	+0.2