Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3360

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3359 and GFF3360 are separated by 77 nucleotidesGFF3360 and GFF3361 are separated by 30 nucleotidesGFF3361 and GFF3362 are separated by 15 nucleotidesGFF3362 and GFF3363 are separated by 40 nucleotides GFF3359 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 244,597 to 245,724 GFF3359 GFF3360 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 245,802 to 246,890 GFF3360 GFF3361 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 246,921 to 247,571 GFF3361 GFF3362 - hypothetical protein, at 247,587 to 247,748 GFF3362 GFF3363 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 247,789 to 249,210 GFF3363 Position (kb) 245 246 247Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 245.713 kb on + strandat 245.714 kb on - strandat 245.741 kb on + strandat 245.741 kb on + strandat 245.741 kb on + strandat 245.742 kb on - strandat 245.800 kb on + strandat 245.800 kb on + strandat 245.800 kb on + strandat 245.800 kb on + strandat 245.800 kb on + strandat 245.801 kb on - strandat 245.801 kb on - strandat 245.801 kb on - strandat 245.801 kb on - strandat 245.801 kb on - strandat 245.801 kb on - strandat 245.813 kb on + strandat 245.814 kb on - strandat 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.005 kb on + strand, within GFF3360at 246.005 kb on + strand, within GFF3360at 246.006 kb on - strand, within GFF3360at 246.067 kb on + strand, within GFF3360at 246.067 kb on + strand, within GFF3360at 246.068 kb on - strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.406 kb on + strand, within GFF3360at 246.407 kb on - strand, within GFF3360at 246.407 kb on - strand, within GFF3360at 246.407 kb on - strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.577 kb on + strand, within GFF3360at 246.673 kb on + strand, within GFF3360at 246.673 kb on + strand, within GFF3360at 246.674 kb on - strand, within GFF3360at 246.674 kb on - strand, within GFF3360at 246.766 kb on + strand, within GFF3360at 246.766 kb on + strand, within GFF3360at 246.766 kb on + strand, within GFF3360at 246.766 kb on + strand, within GFF3360at 246.997 kb on + strand, within GFF3361at 246.997 kb on + strand, within GFF3361at 247.042 kb on + strand, within GFF3361at 247.042 kb on + strand, within GFF3361at 247.042 kb on + strand, within GFF3361at 247.043 kb on - strand, within GFF3361at 247.043 kb on - strand, within GFF3361at 247.043 kb on - strand, within GFF3361at 247.043 kb on - strand, within GFF3361at 247.237 kb on + strand, within GFF3361at 247.237 kb on + strand, within GFF3361at 247.237 kb on + strand, within GFF3361at 247.268 kb on - strand, within GFF3361at 247.351 kb on + strand, within GFF3361at 247.430 kb on - strand, within GFF3361at 247.588 kb on + strandat 247.588 kb on + strandat 247.588 kb on + strandat 247.588 kb on + strandat 247.589 kb on - strandat 247.589 kb on - strandat 247.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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245,713 + -1.5
245,714 - -0.9
245,741 + -1.1
245,741 + -1.2
245,741 + +0.1
245,742 - -0.0
245,800 + +0.5
245,800 + +0.3
245,800 + -0.1
245,800 + +0.2
245,800 + -0.4
245,801 - -0.1
245,801 - +0.1
245,801 - +0.2
245,801 - +0.1
245,801 - -0.6
245,801 - -0.5
245,813 + -0.2
245,814 - +0.5
246,000 + GFF3360 0.18 -2.5
246,000 + GFF3360 0.18 -3.1
246,000 + GFF3360 0.18 -2.7
246,000 + GFF3360 0.18 -3.7
246,000 + GFF3360 0.18 -4.0
246,000 + GFF3360 0.18 -3.7
246,000 + GFF3360 0.18 -3.3
246,000 + GFF3360 0.18 -3.5
246,000 + GFF3360 0.18 -3.6
246,000 + GFF3360 0.18 -1.9
246,000 + GFF3360 0.18 -3.8
246,000 + GFF3360 0.18 -4.3
246,000 + GFF3360 0.18 -3.0
246,000 + GFF3360 0.18 -4.3
246,001 - GFF3360 0.18 -4.1
246,001 - GFF3360 0.18 -4.7
246,001 - GFF3360 0.18 -0.8
246,001 - GFF3360 0.18 -4.3
246,001 - GFF3360 0.18 -4.1
246,001 - GFF3360 0.18 -4.4
246,001 - GFF3360 0.18 -1.8
246,001 - GFF3360 0.18 -2.1
246,001 - GFF3360 0.18 -2.4
246,001 - GFF3360 0.18 -3.4
246,001 - GFF3360 0.18 -2.4
246,001 - GFF3360 0.18 -2.8
246,005 + GFF3360 0.19 -2.6
246,005 + GFF3360 0.19 -4.0
246,006 - GFF3360 0.19 -1.9
246,067 + GFF3360 0.24 -2.8
246,067 + GFF3360 0.24 -4.6
246,068 - GFF3360 0.24 -2.4
246,232 + GFF3360 0.39 -2.4
246,232 + GFF3360 0.39 -2.8
246,232 + GFF3360 0.39 -0.8
246,232 + GFF3360 0.39 -0.5
246,232 + GFF3360 0.39 -4.2
246,232 + GFF3360 0.39 -1.5
246,232 + GFF3360 0.39 -0.5
246,232 + GFF3360 0.39 -3.6
246,232 + GFF3360 0.39 -2.7
246,232 + GFF3360 0.39 -2.3
246,232 + GFF3360 0.39 -2.1
246,232 + GFF3360 0.39 -4.0
246,232 + GFF3360 0.39 -1.8
246,232 + GFF3360 0.39 -1.6
246,232 + GFF3360 0.39 -2.1
246,232 + GFF3360 0.39 -4.2
246,232 + GFF3360 0.39 -2.7
246,233 - GFF3360 0.40 -2.1
246,233 - GFF3360 0.40 -1.6
246,233 - GFF3360 0.40 -2.0
246,233 - GFF3360 0.40 -3.5
246,233 - GFF3360 0.40 -1.7
246,233 - GFF3360 0.40 -0.5
246,233 - GFF3360 0.40 -2.1
246,233 - GFF3360 0.40 -2.1
246,233 - GFF3360 0.40 -3.8
246,233 - GFF3360 0.40 -3.4
246,233 - GFF3360 0.40 -4.1
246,233 - GFF3360 0.40 -4.2
246,406 + GFF3360 0.55 -4.0
246,407 - GFF3360 0.56 -4.0
246,407 - GFF3360 0.56 -1.9
246,407 - GFF3360 0.56 -0.5
246,487 + GFF3360 0.63 -3.1
246,487 + GFF3360 0.63 -2.2
246,487 + GFF3360 0.63 -2.2
246,487 + GFF3360 0.63 -3.8
246,487 + GFF3360 0.63 -2.7
246,488 - GFF3360 0.63 -1.5
246,488 - GFF3360 0.63 -3.6
246,488 - GFF3360 0.63 -2.2
246,488 - GFF3360 0.63 -3.7
246,488 - GFF3360 0.63 -3.7
246,488 - GFF3360 0.63 -3.2
246,488 - GFF3360 0.63 -3.3
246,488 - GFF3360 0.63 -2.4
246,488 - GFF3360 0.63 -4.2
246,488 - GFF3360 0.63 -3.2
246,488 - GFF3360 0.63 -3.4
246,577 + GFF3360 0.71 -3.0
246,673 + GFF3360 0.80 -3.0
246,673 + GFF3360 0.80 -4.6
246,674 - GFF3360 0.80 -3.8
246,674 - GFF3360 0.80 -2.0
246,766 + GFF3360 0.89 +0.2
246,766 + GFF3360 0.89 -1.4
246,766 + GFF3360 0.89 -2.2
246,766 + GFF3360 0.89 -1.7
246,997 + GFF3361 0.12 -3.9
246,997 + GFF3361 0.12 -3.7
247,042 + GFF3361 0.19 -3.3
247,042 + GFF3361 0.19 -4.5
247,042 + GFF3361 0.19 -1.7
247,043 - GFF3361 0.19 -2.5
247,043 - GFF3361 0.19 -3.4
247,043 - GFF3361 0.19 -1.7
247,043 - GFF3361 0.19 -2.5
247,237 + GFF3361 0.49 -3.9
247,237 + GFF3361 0.49 -3.7
247,237 + GFF3361 0.49 -1.8
247,268 - GFF3361 0.53 -2.8
247,351 + GFF3361 0.66 -4.8
247,430 - GFF3361 0.78 -3.6
247,588 + -0.7
247,588 + -0.1
247,588 + -0.4
247,588 + -2.2
247,589 - -0.5
247,589 - -0.1
247,589 - -0.1

Or see this region's nucleotide sequence