Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3281

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3279 and GFF3280 are separated by 135 nucleotidesGFF3280 and GFF3281 are separated by 18 nucleotidesGFF3281 and GFF3282 are separated by 28 nucleotides GFF3279 - Urea ABC transporter, ATPase protein UrtE, at 164,535 to 165,233 GFF3279 GFF3280 - hypothetical protein, at 165,369 to 165,575 GFF3280 GFF3281 - Tricarboxylate transport protein TctC, at 165,594 to 166,586 GFF3281 GFF3282 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 166,615 to 168,234 GFF3282 Position (kb) 165 166 167Strain fitness (log2 ratio) -1 0 1at 165.114 kb on + strand, within GFF3279at 165.115 kb on - strand, within GFF3279at 165.144 kb on + strand, within GFF3279at 165.429 kb on + strand, within GFF3280at 165.454 kb on - strand, within GFF3280at 165.498 kb on + strand, within GFF3280at 165.564 kb on + strandat 165.564 kb on + strandat 165.958 kb on + strand, within GFF3281at 165.959 kb on - strand, within GFF3281at 165.961 kb on + strand, within GFF3281at 165.962 kb on - strand, within GFF3281at 166.099 kb on + strand, within GFF3281at 166.100 kb on - strand, within GFF3281at 166.301 kb on - strand, within GFF3281at 167.582 kb on + strand, within GFF3282

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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165,114 + GFF3279 0.83 +0.4
165,115 - GFF3279 0.83 +0.3
165,144 + GFF3279 0.87 +0.1
165,429 + GFF3280 0.29 +0.9
165,454 - GFF3280 0.41 +0.9
165,498 + GFF3280 0.62 -0.3
165,564 + -0.0
165,564 + -0.4
165,958 + GFF3281 0.37 -0.0
165,959 - GFF3281 0.37 -0.9
165,961 + GFF3281 0.37 -0.0
165,962 - GFF3281 0.37 -0.4
166,099 + GFF3281 0.51 -0.5
166,100 - GFF3281 0.51 +0.5
166,301 - GFF3281 0.71 -1.4
167,582 + GFF3282 0.60 +0.4

Or see this region's nucleotide sequence