Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3205 and GFF3206 are separated by 139 nucleotides GFF3206 and GFF3207 are separated by 13 nucleotides GFF3207 and GFF3208 are separated by 199 nucleotides GFF3208 and GFF3209 overlap by 17 nucleotides
GFF3205 - hypothetical protein, at 91,902 to 92,525
GFF3205
GFF3206 - hypothetical protein, at 92,665 to 93,243
GFF3206
GFF3207 - hypothetical protein, at 93,257 to 94,069
GFF3207
GFF3208 - hypothetical protein, at 94,269 to 94,910
GFF3208
GFF3209 - cell filamentation protein, at 94,894 to 95,643
GFF3209
Position (kb) 93
94
95 Strain fitness (log2 ratio) -1
0
1
2 at 92.690 kb on - strand at 92.779 kb on + strand, within GFF3206 at 93.182 kb on - strand, within GFF3206 at 93.182 kb on - strand, within GFF3206 at 93.241 kb on + strand at 93.241 kb on + strand at 93.242 kb on - strand at 93.242 kb on - strand at 93.242 kb on - strand at 93.321 kb on - strand at 93.345 kb on - strand, within GFF3207 at 93.464 kb on + strand, within GFF3207 at 93.539 kb on + strand, within GFF3207 at 93.587 kb on + strand, within GFF3207 at 93.587 kb on + strand, within GFF3207 at 93.588 kb on - strand, within GFF3207 at 93.588 kb on - strand, within GFF3207 at 94.068 kb on - strand at 94.189 kb on + strand at 94.908 kb on + strand at 95.023 kb on + strand, within GFF3209 at 95.024 kb on - strand, within GFF3209 at 95.024 kb on - strand, within GFF3209
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 92,690 - +0.7 92,779 + GFF3206 0.20 +0.4 93,182 - GFF3206 0.89 -0.3 93,182 - GFF3206 0.89 -0.3 93,241 + +0.2 93,241 + +0.5 93,242 - +0.1 93,242 - -0.9 93,242 - -0.3 93,321 - -0.1 93,345 - GFF3207 0.11 +0.1 93,464 + GFF3207 0.25 +0.5 93,539 + GFF3207 0.35 +1.8 93,587 + GFF3207 0.41 -0.2 93,587 + GFF3207 0.41 -0.4 93,588 - GFF3207 0.41 +0.2 93,588 - GFF3207 0.41 +0.5 94,068 - +0.1 94,189 + +0.3 94,908 + -0.2 95,023 + GFF3209 0.17 -0.3 95,024 - GFF3209 0.17 +0.3 95,024 - GFF3209 0.17 -0.5
Or see this region's nucleotide sequence