Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF309 and GFF310 are separated by 490 nucleotides GFF310 and GFF311 are separated by 21 nucleotides GFF311 and GFF312 are separated by 90 nucleotides GFF312 and GFF313 are separated by 131 nucleotides
GFF309 - hypothetical protein, at 331,804 to 331,980
GFF309
GFF310 - hypothetical protein, at 332,471 to 332,644
GFF310
GFF311 - Mobile element protein, at 332,666 to 332,806
GFF311
GFF312 - Mobile element protein, at 332,897 to 333,031
GFF312
GFF313 - Mobile element protein, at 333,163 to 334,722
GFF313
Position (kb) 332
333
334 Strain fitness (log2 ratio) -1
0
1 at 331.970 kb on + strand at 332.000 kb on - strand at 332.000 kb on - strand at 332.000 kb on - strand at 332.049 kb on + strand at 332.049 kb on + strand at 332.154 kb on + strand at 332.155 kb on - strand at 332.155 kb on - strand at 332.155 kb on - strand at 332.155 kb on - strand at 332.159 kb on - strand at 332.178 kb on - strand at 332.226 kb on + strand at 332.227 kb on - strand at 332.281 kb on + strand at 332.281 kb on + strand at 332.348 kb on + strand at 332.348 kb on + strand at 332.349 kb on - strand at 332.382 kb on + strand at 332.382 kb on + strand at 332.383 kb on - strand at 332.383 kb on - strand at 332.383 kb on - strand at 332.383 kb on - strand at 332.383 kb on - strand at 332.383 kb on - strand at 332.387 kb on - strand at 332.446 kb on - strand at 332.462 kb on + strand at 332.462 kb on + strand at 332.669 kb on + strand at 332.669 kb on + strand at 332.669 kb on + strand at 332.670 kb on - strand at 332.735 kb on + strand, within GFF311 at 332.736 kb on - strand, within GFF311 at 332.736 kb on - strand, within GFF311 at 332.831 kb on - strand at 332.940 kb on - strand, within GFF312 at 333.091 kb on - strand at 333.118 kb on - strand at 333.129 kb on + strand at 333.165 kb on - strand at 333.257 kb on + strand at 333.258 kb on - strand at 333.258 kb on - strand at 333.371 kb on - strand, within GFF313 at 333.511 kb on + strand, within GFF313 at 333.511 kb on + strand, within GFF313 at 333.511 kb on + strand, within GFF313 at 333.512 kb on - strand, within GFF313 at 333.512 kb on - strand, within GFF313 at 333.512 kb on - strand, within GFF313 at 333.828 kb on - strand, within GFF313 at 333.917 kb on + strand, within GFF313 at 333.918 kb on - strand, within GFF313 at 333.979 kb on + strand, within GFF313
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 331,970 + +0.2 332,000 - -0.1 332,000 - -0.5 332,000 - -0.1 332,049 + -1.5 332,049 + -0.3 332,154 + +1.0 332,155 - +0.0 332,155 - +0.1 332,155 - +0.5 332,155 - -0.2 332,159 - -0.5 332,178 - +0.1 332,226 + -0.1 332,227 - +0.1 332,281 + +0.2 332,281 + +0.4 332,348 + -1.2 332,348 + -0.0 332,349 - +0.8 332,382 + +0.2 332,382 + +0.2 332,383 - -0.9 332,383 - -0.2 332,383 - -0.2 332,383 - +0.6 332,383 - -1.2 332,383 - -0.5 332,387 - +0.6 332,446 - +0.1 332,462 + -0.3 332,462 + -0.3 332,669 + +0.4 332,669 + -0.4 332,669 + -0.2 332,670 - -0.6 332,735 + GFF311 0.49 -0.2 332,736 - GFF311 0.50 +0.6 332,736 - GFF311 0.50 +0.5 332,831 - -0.1 332,940 - GFF312 0.32 -1.1 333,091 - -0.1 333,118 - -0.2 333,129 + +0.5 333,165 - +0.9 333,257 + +0.1 333,258 - -0.1 333,258 - +0.7 333,371 - GFF313 0.13 -0.9 333,511 + GFF313 0.22 +0.5 333,511 + GFF313 0.22 -0.2 333,511 + GFF313 0.22 -0.9 333,512 - GFF313 0.22 -0.2 333,512 - GFF313 0.22 -0.3 333,512 - GFF313 0.22 -0.1 333,828 - GFF313 0.43 +0.2 333,917 + GFF313 0.48 -0.2 333,918 - GFF313 0.48 +0.5 333,979 + GFF313 0.52 +0.6
Or see this region's nucleotide sequence