Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3096 and GFF3097 are separated by 22 nucleotides GFF3097 and GFF3098 are separated by 2 nucleotides GFF3098 and GFF3099 are separated by 41 nucleotides GFF3099 and GFF3100 are separated by 37 nucleotides
GFF3096 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 173,535 to 174,218
GFF3096
GFF3097 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 174,241 to 175,071
GFF3097
GFF3098 - putative exported protein, at 175,074 to 176,042
GFF3098
GFF3099 - Citrate synthase (si) (EC 2.3.3.1), at 176,084 to 176,866
GFF3099
GFF3100 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 176,904 to 178,526
GFF3100
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 174.374 kb on + strand, within GFF3097 at 174.375 kb on - strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.399 kb on - strand, within GFF3097 at 174.399 kb on - strand, within GFF3097 at 174.599 kb on + strand, within GFF3097 at 174.599 kb on + strand, within GFF3097 at 174.600 kb on - strand, within GFF3097 at 174.693 kb on - strand, within GFF3097 at 174.693 kb on - strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.948 kb on - strand, within GFF3097 at 174.948 kb on - strand, within GFF3097 at 175.720 kb on + strand, within GFF3098 at 175.721 kb on - strand, within GFF3098 at 175.784 kb on - strand, within GFF3098 at 175.810 kb on + strand, within GFF3098 at 176.055 kb on - strand at 176.058 kb on + strand at 176.059 kb on - strand at 176.059 kb on - strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.065 kb on - strand at 176.065 kb on - strand at 176.070 kb on + strand at 176.343 kb on + strand, within GFF3099 at 176.343 kb on + strand, within GFF3099 at 176.344 kb on - strand, within GFF3099 at 177.019 kb on + strand at 177.019 kb on + strand at 177.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 174,374 + GFF3097 0.16 -0.0 174,375 - GFF3097 0.16 +0.1 174,398 + GFF3097 0.19 -1.3 174,398 + GFF3097 0.19 +1.0 174,398 + GFF3097 0.19 -0.6 174,399 - GFF3097 0.19 -0.1 174,399 - GFF3097 0.19 +0.2 174,599 + GFF3097 0.43 +0.6 174,599 + GFF3097 0.43 +0.0 174,600 - GFF3097 0.43 -0.2 174,693 - GFF3097 0.54 +0.0 174,693 - GFF3097 0.54 +1.3 174,947 + GFF3097 0.85 -0.3 174,947 + GFF3097 0.85 +0.9 174,947 + GFF3097 0.85 -0.2 174,947 + GFF3097 0.85 +0.2 174,947 + GFF3097 0.85 +0.3 174,947 + GFF3097 0.85 +1.2 174,948 - GFF3097 0.85 -0.1 174,948 - GFF3097 0.85 -2.2 175,720 + GFF3098 0.67 -2.5 175,721 - GFF3098 0.67 -1.0 175,784 - GFF3098 0.73 -0.6 175,810 + GFF3098 0.76 +0.2 176,055 - +0.9 176,058 + +0.1 176,059 - -0.2 176,059 - -0.1 176,060 + -0.3 176,060 + -0.5 176,060 + +1.1 176,060 + +0.1 176,060 + +0.2 176,060 + +0.3 176,061 - +0.2 176,061 - -0.5 176,061 - -0.0 176,061 - +0.2 176,061 - -0.2 176,061 - -0.3 176,064 + +0.9 176,064 + -0.8 176,064 + -0.7 176,064 + -0.1 176,064 + +1.5 176,064 + -0.4 176,064 + +0.0 176,064 + +2.0 176,065 - -0.1 176,065 - -0.5 176,070 + +0.2 176,343 + GFF3099 0.33 -0.2 176,343 + GFF3099 0.33 -0.3 176,344 - GFF3099 0.33 +0.2 177,019 + -0.1 177,019 + -0.1 177,020 - -0.5
Or see this region's nucleotide sequence