Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2842

Experiment: Ying_Others16 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2840 and GFF2841 are separated by 83 nucleotidesGFF2841 and GFF2842 are separated by 3 nucleotidesGFF2842 and GFF2843 are separated by 14 nucleotidesGFF2843 and GFF2844 are separated by 121 nucleotides GFF2840 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 432,223 to 433,194 GFF2840 GFF2841 - Transcriptional regulator, TetR family, at 433,278 to 433,907 GFF2841 GFF2842 - Enoyl-CoA hydratase (EC 4.2.1.17), at 433,911 to 434,726 GFF2842 GFF2843 - FIG00455451: hypothetical protein, at 434,741 to 435,178 GFF2843 GFF2844 - LysR family transcriptional regulator PA2758, at 435,300 to 436,199 GFF2844 Position (kb) 433 434 435Strain fitness (log2 ratio) -2 -1 0 1at 432.934 kb on + strand, within GFF2840at 433.030 kb on + strand, within GFF2840at 433.030 kb on + strand, within GFF2840at 433.030 kb on + strand, within GFF2840at 433.030 kb on + strand, within GFF2840at 433.030 kb on + strand, within GFF2840at 433.031 kb on - strand, within GFF2840at 433.031 kb on - strand, within GFF2840at 433.031 kb on - strand, within GFF2840at 433.031 kb on - strand, within GFF2840at 433.246 kb on - strandat 433.246 kb on - strandat 433.248 kb on - strandat 433.248 kb on - strandat 433.275 kb on + strandat 433.446 kb on + strand, within GFF2841at 433.446 kb on + strand, within GFF2841at 433.447 kb on - strand, within GFF2841at 433.447 kb on - strand, within GFF2841at 433.476 kb on + strand, within GFF2841at 433.476 kb on + strand, within GFF2841at 433.477 kb on - strand, within GFF2841at 433.477 kb on - strand, within GFF2841at 433.477 kb on - strand, within GFF2841at 433.593 kb on + strand, within GFF2841at 433.593 kb on + strand, within GFF2841at 433.593 kb on + strand, within GFF2841at 433.593 kb on + strand, within GFF2841at 433.594 kb on - strand, within GFF2841at 433.594 kb on - strand, within GFF2841at 433.608 kb on + strand, within GFF2841at 433.608 kb on + strand, within GFF2841at 433.608 kb on + strand, within GFF2841at 433.609 kb on - strand, within GFF2841at 433.629 kb on + strand, within GFF2841at 433.629 kb on + strand, within GFF2841at 433.630 kb on - strand, within GFF2841at 434.109 kb on + strand, within GFF2842at 434.109 kb on + strand, within GFF2842at 434.109 kb on + strand, within GFF2842at 434.109 kb on + strand, within GFF2842at 434.109 kb on + strand, within GFF2842at 434.109 kb on + strand, within GFF2842at 434.326 kb on - strand, within GFF2842at 434.326 kb on - strand, within GFF2842at 434.338 kb on - strand, within GFF2842at 434.592 kb on + strand, within GFF2842at 434.593 kb on - strand, within GFF2842at 434.593 kb on - strand, within GFF2842at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.821 kb on - strand, within GFF2843at 434.821 kb on - strand, within GFF2843at 434.821 kb on - strand, within GFF2843at 434.821 kb on - strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.138 kb on + strandat 435.138 kb on + strandat 435.138 kb on + strandat 435.139 kb on - strandat 435.139 kb on - strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.151 kb on - strandat 435.151 kb on - strandat 435.238 kb on + strandat 435.238 kb on + strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
remove
432,934 + GFF2840 0.73 +0.2
433,030 + GFF2840 0.83 -0.5
433,030 + GFF2840 0.83 -0.2
433,030 + GFF2840 0.83 +0.8
433,030 + GFF2840 0.83 -0.4
433,030 + GFF2840 0.83 +1.1
433,031 - GFF2840 0.83 +0.0
433,031 - GFF2840 0.83 -0.5
433,031 - GFF2840 0.83 -0.1
433,031 - GFF2840 0.83 -0.2
433,246 - -0.5
433,246 - +0.2
433,248 - +0.3
433,248 - -0.2
433,275 + -0.3
433,446 + GFF2841 0.27 +0.0
433,446 + GFF2841 0.27 -0.8
433,447 - GFF2841 0.27 -0.3
433,447 - GFF2841 0.27 -0.5
433,476 + GFF2841 0.31 -0.9
433,476 + GFF2841 0.31 -0.7
433,477 - GFF2841 0.32 +0.3
433,477 - GFF2841 0.32 -0.2
433,477 - GFF2841 0.32 -1.4
433,593 + GFF2841 0.50 +0.1
433,593 + GFF2841 0.50 -0.3
433,593 + GFF2841 0.50 -1.3
433,593 + GFF2841 0.50 +0.6
433,594 - GFF2841 0.50 +0.4
433,594 - GFF2841 0.50 +0.5
433,608 + GFF2841 0.52 +0.2
433,608 + GFF2841 0.52 +0.1
433,608 + GFF2841 0.52 +0.5
433,609 - GFF2841 0.53 +0.3
433,629 + GFF2841 0.56 -0.2
433,629 + GFF2841 0.56 +0.2
433,630 - GFF2841 0.56 -0.3
434,109 + GFF2842 0.24 -0.3
434,109 + GFF2842 0.24 -0.0
434,109 + GFF2842 0.24 -1.8
434,109 + GFF2842 0.24 +1.2
434,109 + GFF2842 0.24 +0.5
434,109 + GFF2842 0.24 -1.7
434,326 - GFF2842 0.51 -0.0
434,326 - GFF2842 0.51 -0.5
434,338 - GFF2842 0.52 -1.1
434,592 + GFF2842 0.83 +0.3
434,593 - GFF2842 0.84 +0.2
434,593 - GFF2842 0.84 -0.9
434,820 + GFF2843 0.18 +0.0
434,820 + GFF2843 0.18 -0.2
434,820 + GFF2843 0.18 +0.5
434,820 + GFF2843 0.18 -0.0
434,820 + GFF2843 0.18 +0.0
434,820 + GFF2843 0.18 +0.3
434,821 - GFF2843 0.18 -0.7
434,821 - GFF2843 0.18 -0.6
434,821 - GFF2843 0.18 -0.1
434,821 - GFF2843 0.18 +0.1
435,015 + GFF2843 0.63 +0.3
435,015 + GFF2843 0.63 -1.1
435,015 + GFF2843 0.63 -0.1
435,015 + GFF2843 0.63 +0.2
435,015 + GFF2843 0.63 +0.2
435,015 + GFF2843 0.63 -0.1
435,015 + GFF2843 0.63 -0.5
435,015 + GFF2843 0.63 -0.8
435,016 - GFF2843 0.63 -0.5
435,016 - GFF2843 0.63 -0.2
435,016 - GFF2843 0.63 +0.5
435,016 - GFF2843 0.63 -0.0
435,016 - GFF2843 0.63 -0.4
435,016 - GFF2843 0.63 +0.3
435,138 + +1.3
435,138 + +0.3
435,138 + +0.8
435,139 - -0.2
435,139 - -0.5
435,150 + -0.6
435,150 + -0.0
435,150 + -0.7
435,150 + -0.4
435,150 + -0.2
435,150 + +0.9
435,150 + +0.1
435,150 + -0.4
435,150 + +0.2
435,151 - +0.5
435,151 - -0.3
435,238 + +0.5
435,238 + +0.6
435,239 - +0.1
435,239 - +1.5
435,239 - +0.9
435,239 - -0.2
435,239 - -0.2
435,239 - +0.2

Or see this region's nucleotide sequence