Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2401

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
46,445	-				+0.2
46,483	+				+0.7
46,484	-				-0.6
46,623	+				-1.4
46,668	+				+0.2
46,668	+				-0.4
46,668	+				-0.2
46,669	-				+0.7
46,679	-				-0.1
46,682	-				+0.5
46,765	-				-0.3
46,765	-				+0.4
46,900	+		GFF2401	0.18	-0.3
46,900	+		GFF2401	0.18	-0.4
46,901	-		GFF2401	0.18	-0.4
46,957	+		GFF2401	0.29	-0.1
46,957	+		GFF2401	0.29	-0.8
46,958	-		GFF2401	0.30	-0.8
47,060	+		GFF2401	0.50	-0.3
47,061	-		GFF2401	0.50	-0.2
47,061	-		GFF2401	0.50	-0.2
47,248	+		GFF2401	0.87	-0.3
47,248	+		GFF2401	0.87	-0.2
47,249	-		GFF2401	0.87	-0.4
47,249	-		GFF2401	0.87	+0.8
47,612	+				-0.1
47,613	-				+0.6
47,613	-				+0.1
47,746	+				+0.3
47,836	+		GFF2402	0.10	-0.6
47,836	+		GFF2402	0.10	+0.0
47,836	+		GFF2402	0.10	-1.0
47,836	+		GFF2402	0.10	+0.0
47,836	+		GFF2402	0.10	+0.6
47,836	+		GFF2402	0.10	+0.0
47,837	-		GFF2402	0.10	-0.3
47,837	-		GFF2402	0.10	-0.0
47,837	-		GFF2402	0.10	+0.2
48,034	+		GFF2402	0.32	+0.1
48,035	-		GFF2402	0.32	-0.2
48,035	-		GFF2402	0.32	-0.3
48,035	-		GFF2402	0.32	-0.1
48,159	-		GFF2402	0.46	+2.1
48,160	+		GFF2402	0.46	-0.6
48,160	+		GFF2402	0.46	-0.8
48,161	-		GFF2402	0.47	+0.4