Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2388 and GFF2389 are separated by 26 nucleotides GFF2389 and GFF2390 overlap by 4 nucleotides GFF2390 and GFF2391 are separated by 12 nucleotides
GFF2388 - monooxygenase, FAD-binding, at 30,073 to 31,617
GFF2388
GFF2389 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 31,644 to 32,402
GFF2389
GFF2390 - Alkanesulfonates transport system permease protein, at 32,399 to 33,187
GFF2390
GFF2391 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 33,200 to 33,958
GFF2391
Position (kb) 31
32
33 Strain fitness (log2 ratio) -2
-1
0
1 at 30.645 kb on - strand, within GFF2388 at 30.645 kb on - strand, within GFF2388 at 30.665 kb on + strand, within GFF2388 at 30.743 kb on + strand, within GFF2388 at 30.786 kb on - strand, within GFF2388 at 30.791 kb on + strand, within GFF2388 at 30.791 kb on + strand, within GFF2388 at 30.792 kb on - strand, within GFF2388 at 30.792 kb on - strand, within GFF2388 at 30.792 kb on - strand, within GFF2388 at 30.792 kb on - strand, within GFF2388 at 30.792 kb on - strand, within GFF2388 at 30.972 kb on - strand, within GFF2388 at 31.122 kb on - strand, within GFF2388 at 31.346 kb on + strand, within GFF2388 at 31.347 kb on - strand, within GFF2388 at 31.618 kb on - strand at 31.793 kb on - strand, within GFF2389 at 32.108 kb on - strand, within GFF2389 at 32.479 kb on - strand, within GFF2390 at 32.724 kb on + strand, within GFF2390 at 32.725 kb on - strand, within GFF2390 at 32.856 kb on - strand, within GFF2390 at 32.890 kb on + strand, within GFF2390 at 32.977 kb on - strand, within GFF2390 at 32.977 kb on - strand, within GFF2390 at 33.072 kb on + strand, within GFF2390 at 33.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 30,645 - GFF2388 0.37 +0.6 30,645 - GFF2388 0.37 +0.3 30,665 + GFF2388 0.38 -0.5 30,743 + GFF2388 0.43 +0.6 30,786 - GFF2388 0.46 -1.0 30,791 + GFF2388 0.46 +0.1 30,791 + GFF2388 0.46 -0.7 30,792 - GFF2388 0.47 +0.0 30,792 - GFF2388 0.47 +0.0 30,792 - GFF2388 0.47 +1.2 30,792 - GFF2388 0.47 -1.0 30,792 - GFF2388 0.47 +0.4 30,972 - GFF2388 0.58 +0.1 31,122 - GFF2388 0.68 -2.0 31,346 + GFF2388 0.82 +0.2 31,347 - GFF2388 0.82 -0.7 31,618 - +0.7 31,793 - GFF2389 0.20 -1.7 32,108 - GFF2389 0.61 -0.5 32,479 - GFF2390 0.10 -0.2 32,724 + GFF2390 0.41 +0.2 32,725 - GFF2390 0.41 -1.5 32,856 - GFF2390 0.58 -0.1 32,890 + GFF2390 0.62 -0.0 32,977 - GFF2390 0.73 +0.1 32,977 - GFF2390 0.73 +0.3 33,072 + GFF2390 0.85 +0.4 33,246 + -1.6
Or see this region's nucleotide sequence