Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1278 and GFF2347 are separated by 50 nucleotides GFF2347 and GFF1279 are separated by 200 nucleotides
GFF1278 - Octaprenyl diphosphate synthase (EC 2.5.1.90), at 135,142 to 136,092
GFF1278
GFF2347 - tRNA-Pro-CGG, at 136,143 to 136,216
GFF2347
GFF1279 - Type IV fimbrial assembly, ATPase PilB, at 136,417 to 138,111
GFF1279
Position (kb) 136
137 Strain fitness (log2 ratio) -1
0
1
2 at 136.150 kb on + strand at 136.150 kb on + strand at 136.151 kb on - strand, within GFF2347 at 136.151 kb on - strand, within GFF2347 at 136.151 kb on - strand, within GFF2347 at 136.155 kb on + strand, within GFF2347 at 136.156 kb on - strand, within GFF2347 at 136.163 kb on + strand, within GFF2347 at 136.163 kb on + strand, within GFF2347 at 136.163 kb on + strand, within GFF2347 at 136.164 kb on - strand, within GFF2347 at 136.171 kb on + strand, within GFF2347 at 136.184 kb on + strand, within GFF2347 at 136.184 kb on + strand, within GFF2347 at 136.184 kb on + strand, within GFF2347 at 136.184 kb on + strand, within GFF2347 at 136.185 kb on - strand, within GFF2347 at 136.288 kb on + strand at 136.288 kb on + strand at 136.289 kb on - strand at 136.289 kb on - strand at 136.289 kb on - strand at 136.336 kb on + strand at 136.336 kb on + strand at 136.336 kb on + strand at 136.337 kb on - strand at 136.337 kb on - strand at 136.337 kb on - strand at 136.360 kb on - strand at 136.364 kb on + strand at 136.364 kb on + strand at 136.364 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.369 kb on + strand at 136.370 kb on - strand at 136.370 kb on - strand at 136.370 kb on - strand at 136.370 kb on - strand at 136.370 kb on - strand at 136.370 kb on - strand at 136.370 kb on - strand at 136.370 kb on - strand at 136.370 kb on - strand at 136.376 kb on + strand at 136.377 kb on + strand at 136.378 kb on - strand at 136.489 kb on + strand at 136.673 kb on - strand, within GFF1279 at 136.801 kb on + strand, within GFF1279 at 136.801 kb on + strand, within GFF1279 at 136.802 kb on - strand, within GFF1279 at 136.802 kb on - strand, within GFF1279 at 136.802 kb on - strand, within GFF1279 at 137.029 kb on + strand, within GFF1279 at 137.029 kb on + strand, within GFF1279 at 137.030 kb on - strand, within GFF1279 at 137.041 kb on + strand, within GFF1279 at 137.041 kb on + strand, within GFF1279 at 137.041 kb on + strand, within GFF1279
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 136,150 + -0.4 136,150 + -0.1 136,151 - GFF2347 0.11 -1.2 136,151 - GFF2347 0.11 -1.7 136,151 - GFF2347 0.11 +0.5 136,155 + GFF2347 0.16 -1.4 136,156 - GFF2347 0.18 -0.4 136,163 + GFF2347 0.27 -0.6 136,163 + GFF2347 0.27 -0.7 136,163 + GFF2347 0.27 +1.5 136,164 - GFF2347 0.28 -1.3 136,171 + GFF2347 0.38 +2.2 136,184 + GFF2347 0.55 -0.3 136,184 + GFF2347 0.55 +0.7 136,184 + GFF2347 0.55 -1.3 136,184 + GFF2347 0.55 -0.9 136,185 - GFF2347 0.57 -1.7 136,288 + -0.1 136,288 + -0.1 136,289 - +0.4 136,289 - +0.5 136,289 - -0.9 136,336 + +0.3 136,336 + +1.3 136,336 + +0.5 136,337 - +0.2 136,337 - +0.0 136,337 - +0.5 136,360 - -0.0 136,364 + -0.6 136,364 + +0.3 136,364 + -0.1 136,369 + +0.2 136,369 + +0.5 136,369 + +0.6 136,369 + +1.1 136,369 + -1.5 136,369 + +0.8 136,369 + +0.8 136,369 + +0.5 136,369 + +0.3 136,369 + +1.1 136,369 + +0.5 136,369 + +1.0 136,370 - -0.7 136,370 - +0.9 136,370 - +0.6 136,370 - +0.3 136,370 - +0.7 136,370 - -0.1 136,370 - +0.5 136,370 - +0.2 136,370 - +0.5 136,376 + +0.2 136,377 + +0.3 136,378 - +0.2 136,489 + +0.4 136,673 - GFF1279 0.15 +0.4 136,801 + GFF1279 0.23 -1.0 136,801 + GFF1279 0.23 +0.2 136,802 - GFF1279 0.23 +0.7 136,802 - GFF1279 0.23 +1.3 136,802 - GFF1279 0.23 +2.2 137,029 + GFF1279 0.36 +0.1 137,029 + GFF1279 0.36 +0.3 137,030 - GFF1279 0.36 +0.2 137,041 + GFF1279 0.37 +0.3 137,041 + GFF1279 0.37 +0.0 137,041 + GFF1279 0.37 +0.3
Or see this region's nucleotide sequence