Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1986

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1984 and GFF1985 are separated by 263 nucleotidesGFF1985 and GFF1986 are separated by 30 nucleotidesGFF1986 and GFF1987 are separated by 92 nucleotidesGFF1987 and GFF1988 are separated by 4 nucleotides GFF1984 - Permease of the drug/metabolite transporter (DMT) superfamily, at 858,652 to 859,557 GFF1984 GFF1985 - hypothetical protein, at 859,821 to 860,096 GFF1985 GFF1986 - hypothetical protein, at 860,127 to 864,020 GFF1986 GFF1987 - hypothetical protein, at 864,113 to 864,535 GFF1987 GFF1988 - Transcriptional regulator, LysR family, at 864,540 to 865,457 GFF1988 Position (kb) 860 861 862 863 864 865Strain fitness (log2 ratio) -2 -1 0 1 2at 859.240 kb on + strand, within GFF1984at 859.240 kb on + strand, within GFF1984at 859.241 kb on - strand, within GFF1984at 859.372 kb on + strand, within GFF1984at 859.372 kb on + strand, within GFF1984at 859.373 kb on - strand, within GFF1984at 859.373 kb on - strand, within GFF1984at 859.373 kb on - strand, within GFF1984at 859.373 kb on - strand, within GFF1984at 859.373 kb on - strand, within GFF1984at 859.373 kb on - strand, within GFF1984at 859.403 kb on + strand, within GFF1984at 859.403 kb on - strand, within GFF1984at 859.638 kb on + strandat 859.638 kb on + strandat 859.638 kb on + strandat 859.638 kb on + strandat 859.639 kb on - strandat 859.639 kb on - strandat 859.639 kb on - strandat 859.639 kb on - strandat 859.639 kb on - strandat 859.639 kb on - strandat 859.639 kb on - strandat 859.639 kb on - strandat 859.639 kb on - strandat 859.642 kb on + strandat 859.642 kb on + strandat 859.642 kb on + strandat 859.643 kb on - strandat 859.643 kb on - strandat 859.643 kb on - strandat 860.013 kb on + strand, within GFF1985at 860.014 kb on - strand, within GFF1985at 860.058 kb on + strand, within GFF1985at 860.115 kb on + strandat 860.115 kb on + strandat 860.115 kb on + strandat 860.116 kb on - strandat 860.230 kb on - strandat 860.230 kb on - strandat 860.230 kb on - strandat 860.380 kb on - strandat 860.781 kb on + strand, within GFF1986at 860.781 kb on + strand, within GFF1986at 860.782 kb on - strand, within GFF1986at 860.782 kb on - strand, within GFF1986at 860.782 kb on - strand, within GFF1986at 860.907 kb on + strand, within GFF1986at 860.907 kb on + strand, within GFF1986at 860.907 kb on + strand, within GFF1986at 860.907 kb on + strand, within GFF1986at 860.907 kb on + strand, within GFF1986at 860.908 kb on - strand, within GFF1986at 860.908 kb on - strand, within GFF1986at 860.908 kb on - strand, within GFF1986at 860.908 kb on - strand, within GFF1986at 860.919 kb on + strand, within GFF1986at 860.919 kb on + strand, within GFF1986at 861.381 kb on + strand, within GFF1986at 861.381 kb on + strand, within GFF1986at 861.381 kb on + strand, within GFF1986at 861.381 kb on + strand, within GFF1986at 861.382 kb on - strand, within GFF1986at 861.382 kb on - strand, within GFF1986at 861.415 kb on + strand, within GFF1986at 861.566 kb on + strand, within GFF1986at 861.696 kb on + strand, within GFF1986at 861.697 kb on - strand, within GFF1986at 861.697 kb on - strand, within GFF1986at 861.697 kb on - strand, within GFF1986at 861.781 kb on + strand, within GFF1986at 861.781 kb on + strand, within GFF1986at 861.782 kb on - strand, within GFF1986at 861.782 kb on - strand, within GFF1986at 861.782 kb on - strand, within GFF1986at 861.782 kb on - strand, within GFF1986at 861.801 kb on + strand, within GFF1986at 861.801 kb on + strand, within GFF1986at 861.801 kb on + strand, within GFF1986at 861.801 kb on + strand, within GFF1986at 861.802 kb on - strand, within GFF1986at 861.802 kb on - strand, within GFF1986at 861.802 kb on - strand, within GFF1986at 861.802 kb on - strand, within GFF1986at 861.802 kb on - strand, within GFF1986at 862.050 kb on + strand, within GFF1986at 862.050 kb on + strand, within GFF1986at 862.050 kb on + strand, within GFF1986at 862.050 kb on + strand, within GFF1986at 862.051 kb on - strand, within GFF1986at 862.051 kb on - strand, within GFF1986at 862.258 kb on - strand, within GFF1986at 862.325 kb on + strand, within GFF1986at 862.326 kb on - strand, within GFF1986at 862.326 kb on - strand, within GFF1986at 862.326 kb on - strand, within GFF1986at 862.326 kb on - strand, within GFF1986at 862.710 kb on + strand, within GFF1986at 862.710 kb on + strand, within GFF1986at 862.711 kb on - strand, within GFF1986at 862.711 kb on - strand, within GFF1986at 862.711 kb on - strand, within GFF1986at 863.022 kb on + strand, within GFF1986at 863.024 kb on - strand, within GFF1986at 863.124 kb on + strand, within GFF1986at 863.125 kb on - strand, within GFF1986at 863.125 kb on - strand, within GFF1986at 863.280 kb on + strand, within GFF1986at 863.281 kb on - strand, within GFF1986at 863.281 kb on - strand, within GFF1986at 863.360 kb on + strand, within GFF1986at 863.360 kb on + strand, within GFF1986at 863.360 kb on + strand, within GFF1986at 863.361 kb on - strand, within GFF1986at 863.361 kb on - strand, within GFF1986at 863.361 kb on - strand, within GFF1986at 863.361 kb on - strand, within GFF1986at 863.361 kb on - strand, within GFF1986at 863.364 kb on + strand, within GFF1986at 863.364 kb on + strand, within GFF1986at 863.365 kb on - strand, within GFF1986at 863.365 kb on - strand, within GFF1986at 863.423 kb on - strand, within GFF1986at 863.496 kb on - strand, within GFF1986at 863.602 kb on - strand, within GFF1986at 863.628 kb on + strand, within GFF1986at 863.628 kb on + strand, within GFF1986at 863.628 kb on + strand, within GFF1986at 863.629 kb on - strand, within GFF1986at 863.629 kb on - strand, within GFF1986at 863.674 kb on + strandat 863.674 kb on + strandat 863.674 kb on + strandat 863.674 kb on + strandat 863.675 kb on - strandat 863.675 kb on - strandat 864.044 kb on + strandat 864.044 kb on + strandat 864.044 kb on + strandat 864.044 kb on + strandat 864.045 kb on - strandat 864.045 kb on - strandat 864.045 kb on - strandat 864.045 kb on - strandat 864.045 kb on - strandat 864.254 kb on + strand, within GFF1987at 864.254 kb on + strand, within GFF1987at 864.254 kb on + strand, within GFF1987at 864.255 kb on - strand, within GFF1987at 864.255 kb on - strand, within GFF1987at 864.255 kb on - strand, within GFF1987at 864.257 kb on + strand, within GFF1987at 864.257 kb on + strand, within GFF1987at 864.257 kb on + strand, within GFF1987at 864.257 kb on + strand, within GFF1987at 864.257 kb on + strand, within GFF1987at 864.258 kb on - strand, within GFF1987at 864.258 kb on - strand, within GFF1987at 864.260 kb on + strand, within GFF1987at 864.260 kb on + strand, within GFF1987at 864.260 kb on + strand, within GFF1987at 864.260 kb on + strand, within GFF1987at 864.260 kb on + strand, within GFF1987at 864.261 kb on - strand, within GFF1987at 864.261 kb on - strand, within GFF1987at 864.261 kb on - strand, within GFF1987at 864.261 kb on - strand, within GFF1987at 864.261 kb on - strand, within GFF1987at 864.261 kb on - strand, within GFF1987at 864.261 kb on - strand, within GFF1987at 864.533 kb on + strandat 864.534 kb on - strandat 864.534 kb on - strandat 864.534 kb on - strandat 864.724 kb on + strand, within GFF1988at 864.724 kb on + strand, within GFF1988at 864.725 kb on - strand, within GFF1988at 864.725 kb on - strand, within GFF1988at 864.928 kb on + strand, within GFF1988at 864.928 kb on + strand, within GFF1988

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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859,240 + GFF1984 0.65 +0.2
859,240 + GFF1984 0.65 -0.6
859,241 - GFF1984 0.65 +0.1
859,372 + GFF1984 0.79 -0.7
859,372 + GFF1984 0.79 -0.0
859,373 - GFF1984 0.80 +0.3
859,373 - GFF1984 0.80 -0.0
859,373 - GFF1984 0.80 +0.3
859,373 - GFF1984 0.80 +0.7
859,373 - GFF1984 0.80 +1.4
859,373 - GFF1984 0.80 -0.4
859,403 + GFF1984 0.83 +0.8
859,403 - GFF1984 0.83 -0.2
859,638 + -0.2
859,638 + -0.3
859,638 + -0.0
859,638 + -0.3
859,639 - -0.2
859,639 - +0.6
859,639 - -0.0
859,639 - +0.3
859,639 - +0.1
859,639 - -0.3
859,639 - +0.5
859,639 - -1.6
859,639 - -0.3
859,642 + +0.2
859,642 + -0.2
859,642 + -0.2
859,643 - +0.7
859,643 - -0.5
859,643 - +1.2
860,013 + GFF1985 0.70 +0.3
860,014 - GFF1985 0.70 -0.1
860,058 + GFF1985 0.86 +0.0
860,115 + +1.3
860,115 + +0.1
860,115 + +1.8
860,116 - +0.2
860,230 - -0.2
860,230 - -0.8
860,230 - +0.2
860,380 - -0.4
860,781 + GFF1986 0.17 +0.4
860,781 + GFF1986 0.17 +0.5
860,782 - GFF1986 0.17 -0.0
860,782 - GFF1986 0.17 -0.4
860,782 - GFF1986 0.17 +0.5
860,907 + GFF1986 0.20 +0.7
860,907 + GFF1986 0.20 +0.5
860,907 + GFF1986 0.20 -0.0
860,907 + GFF1986 0.20 -0.1
860,907 + GFF1986 0.20 +0.2
860,908 - GFF1986 0.20 -0.3
860,908 - GFF1986 0.20 -0.3
860,908 - GFF1986 0.20 +0.2
860,908 - GFF1986 0.20 +2.1
860,919 + GFF1986 0.20 +0.2
860,919 + GFF1986 0.20 +1.3
861,381 + GFF1986 0.32 -0.3
861,381 + GFF1986 0.32 +0.4
861,381 + GFF1986 0.32 -0.2
861,381 + GFF1986 0.32 +2.5
861,382 - GFF1986 0.32 +0.3
861,382 - GFF1986 0.32 -1.8
861,415 + GFF1986 0.33 -1.0
861,566 + GFF1986 0.37 +0.5
861,696 + GFF1986 0.40 -0.2
861,697 - GFF1986 0.40 +0.4
861,697 - GFF1986 0.40 -0.8
861,697 - GFF1986 0.40 +0.1
861,781 + GFF1986 0.42 -0.7
861,781 + GFF1986 0.42 -0.1
861,782 - GFF1986 0.43 +0.0
861,782 - GFF1986 0.43 -0.4
861,782 - GFF1986 0.43 -0.0
861,782 - GFF1986 0.43 +0.6
861,801 + GFF1986 0.43 +1.5
861,801 + GFF1986 0.43 -0.2
861,801 + GFF1986 0.43 +0.9
861,801 + GFF1986 0.43 +0.7
861,802 - GFF1986 0.43 -0.4
861,802 - GFF1986 0.43 +0.1
861,802 - GFF1986 0.43 +0.9
861,802 - GFF1986 0.43 -0.8
861,802 - GFF1986 0.43 -0.1
862,050 + GFF1986 0.49 +0.1
862,050 + GFF1986 0.49 -0.1
862,050 + GFF1986 0.49 +1.0
862,050 + GFF1986 0.49 +0.1
862,051 - GFF1986 0.49 +0.3
862,051 - GFF1986 0.49 +0.1
862,258 - GFF1986 0.55 +0.2
862,325 + GFF1986 0.56 +0.0
862,326 - GFF1986 0.56 -0.9
862,326 - GFF1986 0.56 +0.3
862,326 - GFF1986 0.56 -0.0
862,326 - GFF1986 0.56 -0.0
862,710 + GFF1986 0.66 -0.2
862,710 + GFF1986 0.66 +0.4
862,711 - GFF1986 0.66 -0.4
862,711 - GFF1986 0.66 +0.7
862,711 - GFF1986 0.66 +1.0
863,022 + GFF1986 0.74 -0.9
863,024 - GFF1986 0.74 -0.1
863,124 + GFF1986 0.77 +1.0
863,125 - GFF1986 0.77 -1.4
863,125 - GFF1986 0.77 -0.3
863,280 + GFF1986 0.81 -0.8
863,281 - GFF1986 0.81 +2.1
863,281 - GFF1986 0.81 -0.3
863,360 + GFF1986 0.83 +0.1
863,360 + GFF1986 0.83 +0.5
863,360 + GFF1986 0.83 -0.0
863,361 - GFF1986 0.83 -0.1
863,361 - GFF1986 0.83 -0.1
863,361 - GFF1986 0.83 +0.4
863,361 - GFF1986 0.83 -0.3
863,361 - GFF1986 0.83 -0.3
863,364 + GFF1986 0.83 +0.2
863,364 + GFF1986 0.83 +0.1
863,365 - GFF1986 0.83 -0.0
863,365 - GFF1986 0.83 -0.2
863,423 - GFF1986 0.85 +0.6
863,496 - GFF1986 0.87 +0.3
863,602 - GFF1986 0.89 -0.2
863,628 + GFF1986 0.90 +0.9
863,628 + GFF1986 0.90 +0.5
863,628 + GFF1986 0.90 +0.5
863,629 - GFF1986 0.90 +0.8
863,629 - GFF1986 0.90 +0.0
863,674 + +0.6
863,674 + +0.3
863,674 + -0.5
863,674 + -0.3
863,675 - -0.2
863,675 - -1.3
864,044 + +1.2
864,044 + +0.8
864,044 + -0.0
864,044 + +0.0
864,045 - +0.0
864,045 - -0.2
864,045 - +0.3
864,045 - -0.3
864,045 - +0.5
864,254 + GFF1987 0.33 -1.0
864,254 + GFF1987 0.33 +0.4
864,254 + GFF1987 0.33 +0.5
864,255 - GFF1987 0.34 +0.1
864,255 - GFF1987 0.34 -0.0
864,255 - GFF1987 0.34 +0.2
864,257 + GFF1987 0.34 -0.3
864,257 + GFF1987 0.34 -0.1
864,257 + GFF1987 0.34 -0.0
864,257 + GFF1987 0.34 +0.3
864,257 + GFF1987 0.34 -1.5
864,258 - GFF1987 0.34 +0.1
864,258 - GFF1987 0.34 -0.0
864,260 + GFF1987 0.35 -0.8
864,260 + GFF1987 0.35 +1.1
864,260 + GFF1987 0.35 -0.8
864,260 + GFF1987 0.35 -0.0
864,260 + GFF1987 0.35 +0.4
864,261 - GFF1987 0.35 +0.3
864,261 - GFF1987 0.35 -0.5
864,261 - GFF1987 0.35 -0.2
864,261 - GFF1987 0.35 -0.2
864,261 - GFF1987 0.35 +1.0
864,261 - GFF1987 0.35 -0.3
864,261 - GFF1987 0.35 -0.1
864,533 + -0.8
864,534 - +0.0
864,534 - -0.5
864,534 - +0.2
864,724 + GFF1988 0.20 -0.3
864,724 + GFF1988 0.20 +1.0
864,725 - GFF1988 0.20 -0.0
864,725 - GFF1988 0.20 -0.1
864,928 + GFF1988 0.42 -0.6
864,928 + GFF1988 0.42 +1.5

Or see this region's nucleotide sequence