Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1907 and GFF1908 are separated by 2 nucleotides GFF1908 and GFF1909 are separated by 34 nucleotides GFF1909 and GFF1910 overlap by 20 nucleotides GFF1910 and GFF1911 are separated by 146 nucleotides GFF1911 and GFF1912 are separated by 131 nucleotides
GFF1907 - membrane protein, putative, at 781,574 to 782,695
GFF1907
GFF1908 - hypothetical protein, at 782,698 to 782,916
GFF1908
GFF1909 - Integral membrane protein, at 782,951 to 783,559
GFF1909
GFF1910 - Cys regulon transcriptional activator CysB, at 783,540 to 784,427
GFF1910
GFF1911 - hypothetical protein, at 784,574 to 784,966
GFF1911
GFF1912 - integral membrane protein, at 785,098 to 786,570
GFF1912
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1
2 at 783.050 kb on + strand, within GFF1909 at 783.060 kb on - strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.204 kb on - strand, within GFF1909 at 783.204 kb on - strand, within GFF1909 at 783.204 kb on - strand, within GFF1909 at 783.204 kb on - strand, within GFF1909 at 783.273 kb on - strand, within GFF1909 at 783.273 kb on - strand, within GFF1909 at 783.374 kb on + strand, within GFF1909 at 783.383 kb on + strand, within GFF1909 at 783.383 kb on + strand, within GFF1909 at 783.416 kb on + strand, within GFF1909 at 783.417 kb on - strand, within GFF1909 at 783.417 kb on - strand, within GFF1909 at 783.417 kb on - strand, within GFF1909 at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.658 kb on + strand, within GFF1910 at 783.658 kb on + strand, within GFF1910 at 783.659 kb on - strand, within GFF1910 at 783.659 kb on - strand, within GFF1910 at 783.907 kb on + strand, within GFF1910 at 783.908 kb on - strand, within GFF1910 at 783.943 kb on + strand, within GFF1910 at 783.943 kb on + strand, within GFF1910 at 783.943 kb on + strand, within GFF1910 at 783.943 kb on + strand, within GFF1910 at 783.943 kb on + strand, within GFF1910 at 783.943 kb on + strand, within GFF1910 at 784.393 kb on + strand at 784.393 kb on + strand at 784.393 kb on + strand at 784.394 kb on - strand at 784.394 kb on - strand at 784.394 kb on - strand at 784.394 kb on - strand at 784.396 kb on + strand at 784.396 kb on + strand at 784.408 kb on + strand at 784.409 kb on - strand at 784.409 kb on - strand at 784.490 kb on + strand at 784.490 kb on + strand at 785.066 kb on - strand at 785.143 kb on + strand at 785.143 kb on + strand at 785.143 kb on + strand at 785.144 kb on - strand at 785.144 kb on - strand at 785.144 kb on - strand at 785.144 kb on - strand at 785.144 kb on - strand at 785.320 kb on + strand, within GFF1912 at 785.321 kb on - strand, within GFF1912 at 785.321 kb on - strand, within GFF1912 at 785.341 kb on + strand, within GFF1912 at 785.341 kb on + strand, within GFF1912 at 785.341 kb on + strand, within GFF1912 at 785.342 kb on - strand, within GFF1912 at 785.342 kb on - strand, within GFF1912
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 783,050 + GFF1909 0.16 -0.1 783,060 - GFF1909 0.18 -0.5 783,203 + GFF1909 0.41 +0.0 783,203 + GFF1909 0.41 +0.0 783,203 + GFF1909 0.41 -0.5 783,203 + GFF1909 0.41 -1.3 783,203 + GFF1909 0.41 +0.1 783,203 + GFF1909 0.41 -0.6 783,204 - GFF1909 0.42 -0.2 783,204 - GFF1909 0.42 +0.1 783,204 - GFF1909 0.42 -0.0 783,204 - GFF1909 0.42 +0.5 783,273 - GFF1909 0.53 -0.9 783,273 - GFF1909 0.53 +0.0 783,374 + GFF1909 0.69 +0.0 783,383 + GFF1909 0.71 +0.4 783,383 + GFF1909 0.71 -0.5 783,416 + GFF1909 0.76 -0.5 783,417 - GFF1909 0.77 -0.5 783,417 - GFF1909 0.77 -0.5 783,417 - GFF1909 0.77 +0.5 783,610 + -0.0 783,610 + +0.8 783,610 + +0.1 783,610 + +0.3 783,610 + +0.2 783,610 + -0.5 783,610 + +0.2 783,610 + +0.1 783,610 + +0.3 783,610 + +0.3 783,610 + -0.1 783,610 + +0.3 783,610 + +0.1 783,611 - -1.2 783,611 - +1.1 783,611 - -0.5 783,611 - +0.3 783,611 - -1.6 783,611 - -1.0 783,658 + GFF1910 0.13 -0.4 783,658 + GFF1910 0.13 +0.2 783,659 - GFF1910 0.13 -0.3 783,659 - GFF1910 0.13 -0.2 783,907 + GFF1910 0.41 -0.7 783,908 - GFF1910 0.41 +0.7 783,943 + GFF1910 0.45 +1.8 783,943 + GFF1910 0.45 -0.2 783,943 + GFF1910 0.45 -0.2 783,943 + GFF1910 0.45 +0.2 783,943 + GFF1910 0.45 +0.6 783,943 + GFF1910 0.45 +0.2 784,393 + +1.2 784,393 + +0.5 784,393 + +0.5 784,394 - +0.1 784,394 - +0.7 784,394 - +0.1 784,394 - -1.0 784,396 + -0.3 784,396 + +0.5 784,408 + -0.6 784,409 - -0.6 784,409 - +0.4 784,490 + +1.1 784,490 + +0.8 785,066 - -0.5 785,143 + -0.0 785,143 + -0.2 785,143 + +1.1 785,144 - -2.0 785,144 - -0.8 785,144 - +0.6 785,144 - -1.5 785,144 - -0.0 785,320 + GFF1912 0.15 +0.4 785,321 - GFF1912 0.15 -0.6 785,321 - GFF1912 0.15 -1.0 785,341 + GFF1912 0.16 -0.0 785,341 + GFF1912 0.16 -0.5 785,341 + GFF1912 0.16 -0.1 785,342 - GFF1912 0.17 -0.4 785,342 - GFF1912 0.17 -0.3
Or see this region's nucleotide sequence