Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1827 and GFF1828 are separated by 8 nucleotides GFF1828 and GFF1829 overlap by 4 nucleotides GFF1829 and GFF1830 overlap by 4 nucleotides GFF1830 and GFF1831 are separated by 78 nucleotides
GFF1827 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 692,008 to 693,480
GFF1827
GFF1828 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 693,489 to 694,262
GFF1828
GFF1829 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 694,259 to 694,909
GFF1829
GFF1830 - Homoprotocatechuate degradative operon repressor, at 694,906 to 695,397
GFF1830
GFF1831 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 695,476 to 696,537
GFF1831
Position (kb) 694
695 Strain fitness (log2 ratio) -1
0
1
2 at 693.637 kb on + strand, within GFF1828 at 693.637 kb on + strand, within GFF1828 at 693.637 kb on + strand, within GFF1828 at 693.638 kb on - strand, within GFF1828 at 693.866 kb on - strand, within GFF1828 at 693.946 kb on + strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 694.075 kb on + strand, within GFF1828 at 694.076 kb on - strand, within GFF1828 at 694.615 kb on - strand, within GFF1829 at 694.617 kb on + strand, within GFF1829 at 694.617 kb on + strand, within GFF1829 at 694.617 kb on + strand, within GFF1829 at 694.617 kb on + strand, within GFF1829 at 694.617 kb on - strand, within GFF1829 at 694.618 kb on - strand, within GFF1829 at 694.776 kb on + strand, within GFF1829 at 694.776 kb on + strand, within GFF1829 at 694.776 kb on + strand, within GFF1829 at 694.776 kb on + strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.806 kb on + strand, within GFF1829 at 694.806 kb on + strand, within GFF1829 at 694.806 kb on + strand, within GFF1829 at 694.872 kb on + strand at 694.989 kb on - strand, within GFF1830 at 694.989 kb on - strand, within GFF1830 at 694.989 kb on - strand, within GFF1830 at 695.036 kb on + strand, within GFF1830 at 695.036 kb on + strand, within GFF1830 at 695.400 kb on - strand at 695.412 kb on - strand at 695.509 kb on + strand at 695.509 kb on + strand at 695.682 kb on - strand, within GFF1831 at 695.749 kb on + strand, within GFF1831 at 695.749 kb on + strand, within GFF1831 at 695.749 kb on + strand, within GFF1831 at 695.749 kb on + strand, within GFF1831 at 695.749 kb on + strand, within GFF1831 at 695.750 kb on - strand, within GFF1831 at 695.750 kb on - strand, within GFF1831 at 695.750 kb on - strand, within GFF1831 at 695.752 kb on + strand, within GFF1831
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 693,637 + GFF1828 0.19 +0.0 693,637 + GFF1828 0.19 +0.1 693,637 + GFF1828 0.19 -0.5 693,638 - GFF1828 0.19 -1.3 693,866 - GFF1828 0.49 +0.4 693,946 + GFF1828 0.59 +0.7 693,947 - GFF1828 0.59 -0.3 693,947 - GFF1828 0.59 +1.8 693,947 - GFF1828 0.59 -0.1 693,947 - GFF1828 0.59 +0.3 694,075 + GFF1828 0.76 -0.3 694,076 - GFF1828 0.76 +0.4 694,615 - GFF1829 0.55 -0.1 694,617 + GFF1829 0.55 -0.2 694,617 + GFF1829 0.55 +0.2 694,617 + GFF1829 0.55 -0.6 694,617 + GFF1829 0.55 +0.1 694,617 - GFF1829 0.55 -0.2 694,618 - GFF1829 0.55 +0.0 694,776 + GFF1829 0.79 -0.1 694,776 + GFF1829 0.79 -0.2 694,776 + GFF1829 0.79 -0.6 694,776 + GFF1829 0.79 -0.3 694,777 - GFF1829 0.80 -0.1 694,777 - GFF1829 0.80 +0.5 694,777 - GFF1829 0.80 -0.2 694,777 - GFF1829 0.80 +0.0 694,777 - GFF1829 0.80 -0.7 694,806 + GFF1829 0.84 -0.1 694,806 + GFF1829 0.84 +0.6 694,806 + GFF1829 0.84 +0.6 694,872 + -1.7 694,989 - GFF1830 0.17 +0.1 694,989 - GFF1830 0.17 +0.0 694,989 - GFF1830 0.17 -0.1 695,036 + GFF1830 0.26 +0.9 695,036 + GFF1830 0.26 +1.0 695,400 - -1.1 695,412 - +0.4 695,509 + +0.3 695,509 + +0.3 695,682 - GFF1831 0.19 -1.4 695,749 + GFF1831 0.26 +2.3 695,749 + GFF1831 0.26 +0.4 695,749 + GFF1831 0.26 -0.6 695,749 + GFF1831 0.26 -0.1 695,749 + GFF1831 0.26 -0.0 695,750 - GFF1831 0.26 +0.1 695,750 - GFF1831 0.26 -0.7 695,750 - GFF1831 0.26 +0.8 695,752 + GFF1831 0.26 -0.4
Or see this region's nucleotide sequence