Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1748

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1747 and GFF1748 are separated by 48 nucleotidesGFF1748 and GFF1749 are separated by 12 nucleotides GFF1747 - COG0488: ATPase components of ABC transporters with duplicated ATPase domains, at 608,484 to 610,376 GFF1747 GFF1748 - sensory box histidine kinase/response regulator, at 610,425 to 612,650 GFF1748 GFF1749 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 612,663 to 614,078 GFF1749 Position (kb) 610 611 612 613Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 609.624 kb on + strand, within GFF1747at 609.624 kb on + strand, within GFF1747at 609.624 kb on + strand, within GFF1747at 609.624 kb on + strand, within GFF1747at 609.624 kb on + strand, within GFF1747at 609.624 kb on + strand, within GFF1747at 609.624 kb on + strand, within GFF1747at 609.624 kb on - strand, within GFF1747at 609.625 kb on - strand, within GFF1747at 609.668 kb on - strand, within GFF1747at 609.668 kb on - strand, within GFF1747at 609.735 kb on + strand, within GFF1747at 609.736 kb on - strand, within GFF1747at 609.736 kb on - strand, within GFF1747at 609.736 kb on - strand, within GFF1747at 609.736 kb on - strand, within GFF1747at 609.736 kb on - strand, within GFF1747at 609.736 kb on - strand, within GFF1747at 609.736 kb on - strand, within GFF1747at 609.736 kb on - strand, within GFF1747at 609.924 kb on + strand, within GFF1747at 609.924 kb on + strand, within GFF1747at 609.924 kb on + strand, within GFF1747at 609.924 kb on + strand, within GFF1747at 609.925 kb on - strand, within GFF1747at 609.925 kb on - strand, within GFF1747at 610.023 kb on + strand, within GFF1747at 610.023 kb on + strand, within GFF1747at 610.024 kb on - strand, within GFF1747at 610.024 kb on - strand, within GFF1747at 610.170 kb on + strand, within GFF1747at 610.170 kb on + strand, within GFF1747at 610.170 kb on + strand, within GFF1747at 610.170 kb on + strand, within GFF1747at 610.170 kb on + strand, within GFF1747at 610.171 kb on - strand, within GFF1747at 610.171 kb on - strand, within GFF1747at 610.171 kb on - strand, within GFF1747at 610.171 kb on - strand, within GFF1747at 610.171 kb on - strand, within GFF1747at 610.172 kb on + strand, within GFF1747at 610.267 kb on + strandat 610.267 kb on + strandat 610.267 kb on + strandat 610.267 kb on + strandat 610.267 kb on + strandat 610.267 kb on + strandat 610.267 kb on + strandat 610.268 kb on - strandat 610.268 kb on - strandat 610.738 kb on - strand, within GFF1748at 611.286 kb on + strand, within GFF1748at 611.287 kb on - strand, within GFF1748at 611.287 kb on - strand, within GFF1748at 611.592 kb on + strand, within GFF1748at 611.592 kb on + strand, within GFF1748at 611.593 kb on - strand, within GFF1748at 611.782 kb on - strand, within GFF1748at 612.096 kb on + strand, within GFF1748at 612.096 kb on + strand, within GFF1748at 612.096 kb on + strand, within GFF1748at 612.097 kb on - strand, within GFF1748at 612.339 kb on + strand, within GFF1748at 612.790 kb on + strandat 612.790 kb on + strandat 612.790 kb on + strandat 612.791 kb on - strandat 612.791 kb on - strandat 612.791 kb on - strandat 612.791 kb on - strandat 612.831 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.129 kb on + strand, within GFF1749at 613.130 kb on - strand, within GFF1749at 613.130 kb on - strand, within GFF1749at 613.130 kb on - strand, within GFF1749at 613.130 kb on - strand, within GFF1749at 613.130 kb on - strand, within GFF1749at 613.130 kb on - strand, within GFF1749at 613.130 kb on - strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.195 kb on + strand, within GFF1749at 613.196 kb on - strand, within GFF1749at 613.196 kb on - strand, within GFF1749at 613.196 kb on - strand, within GFF1749at 613.196 kb on - strand, within GFF1749at 613.196 kb on - strand, within GFF1749at 613.277 kb on - strand, within GFF1749at 613.308 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.312 kb on + strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.313 kb on - strand, within GFF1749at 613.339 kb on + strand, within GFF1749at 613.339 kb on + strand, within GFF1749at 613.340 kb on - strand, within GFF1749at 613.615 kb on + strand, within GFF1749at 613.616 kb on - strand, within GFF1749at 613.616 kb on - strand, within GFF1749

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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609,624 + GFF1747 0.60 -0.2
609,624 + GFF1747 0.60 -0.7
609,624 + GFF1747 0.60 +1.0
609,624 + GFF1747 0.60 -0.7
609,624 + GFF1747 0.60 +0.1
609,624 + GFF1747 0.60 -0.5
609,624 + GFF1747 0.60 -0.4
609,624 - GFF1747 0.60 -0.5
609,625 - GFF1747 0.60 -0.1
609,668 - GFF1747 0.63 -0.3
609,668 - GFF1747 0.63 +0.0
609,735 + GFF1747 0.66 -1.0
609,736 - GFF1747 0.66 -0.8
609,736 - GFF1747 0.66 -0.2
609,736 - GFF1747 0.66 +0.1
609,736 - GFF1747 0.66 +0.3
609,736 - GFF1747 0.66 -0.0
609,736 - GFF1747 0.66 -0.2
609,736 - GFF1747 0.66 +0.1
609,736 - GFF1747 0.66 -0.3
609,924 + GFF1747 0.76 -0.5
609,924 + GFF1747 0.76 -0.0
609,924 + GFF1747 0.76 -0.2
609,924 + GFF1747 0.76 +0.4
609,925 - GFF1747 0.76 +1.5
609,925 - GFF1747 0.76 -0.0
610,023 + GFF1747 0.81 -0.1
610,023 + GFF1747 0.81 +0.0
610,024 - GFF1747 0.81 +0.1
610,024 - GFF1747 0.81 -0.8
610,170 + GFF1747 0.89 +0.4
610,170 + GFF1747 0.89 -0.2
610,170 + GFF1747 0.89 +0.2
610,170 + GFF1747 0.89 +0.1
610,170 + GFF1747 0.89 +0.2
610,171 - GFF1747 0.89 -0.2
610,171 - GFF1747 0.89 +0.0
610,171 - GFF1747 0.89 -0.2
610,171 - GFF1747 0.89 +2.1
610,171 - GFF1747 0.89 -1.2
610,172 + GFF1747 0.89 +1.1
610,267 + -0.5
610,267 + +0.3
610,267 + -0.0
610,267 + -0.2
610,267 + -1.0
610,267 + -0.2
610,267 + -0.0
610,268 - -0.3
610,268 - -1.0
610,738 - GFF1748 0.14 -0.9
611,286 + GFF1748 0.39 -1.0
611,287 - GFF1748 0.39 -0.4
611,287 - GFF1748 0.39 -1.6
611,592 + GFF1748 0.52 +0.4
611,592 + GFF1748 0.52 -0.1
611,593 - GFF1748 0.52 -0.3
611,782 - GFF1748 0.61 -2.8
612,096 + GFF1748 0.75 -1.3
612,096 + GFF1748 0.75 +0.1
612,096 + GFF1748 0.75 -1.0
612,097 - GFF1748 0.75 -2.3
612,339 + GFF1748 0.86 -1.3
612,790 + -0.1
612,790 + -0.2
612,790 + +0.1
612,791 - +0.8
612,791 - -0.5
612,791 - +0.9
612,791 - -0.6
612,831 + GFF1749 0.12 +0.0
613,129 + GFF1749 0.33 +0.4
613,129 + GFF1749 0.33 +0.6
613,129 + GFF1749 0.33 -0.7
613,129 + GFF1749 0.33 +0.2
613,129 + GFF1749 0.33 +0.8
613,129 + GFF1749 0.33 -0.4
613,129 + GFF1749 0.33 -0.2
613,129 + GFF1749 0.33 -1.3
613,129 + GFF1749 0.33 -0.6
613,130 - GFF1749 0.33 -0.7
613,130 - GFF1749 0.33 -0.4
613,130 - GFF1749 0.33 -0.5
613,130 - GFF1749 0.33 -0.4
613,130 - GFF1749 0.33 -0.1
613,130 - GFF1749 0.33 -0.1
613,130 - GFF1749 0.33 -0.1
613,195 + GFF1749 0.38 -0.7
613,195 + GFF1749 0.38 +0.6
613,195 + GFF1749 0.38 -0.6
613,195 + GFF1749 0.38 +1.1
613,195 + GFF1749 0.38 -0.2
613,195 + GFF1749 0.38 +0.9
613,195 + GFF1749 0.38 -0.7
613,195 + GFF1749 0.38 +0.7
613,195 + GFF1749 0.38 -0.2
613,195 + GFF1749 0.38 -0.2
613,196 - GFF1749 0.38 -0.3
613,196 - GFF1749 0.38 -0.8
613,196 - GFF1749 0.38 +0.1
613,196 - GFF1749 0.38 -0.8
613,196 - GFF1749 0.38 -0.9
613,277 - GFF1749 0.43 +0.1
613,308 + GFF1749 0.46 -0.4
613,312 + GFF1749 0.46 +2.1
613,312 + GFF1749 0.46 -1.1
613,312 + GFF1749 0.46 -0.5
613,312 + GFF1749 0.46 -0.0
613,312 + GFF1749 0.46 -0.2
613,312 + GFF1749 0.46 -0.2
613,312 + GFF1749 0.46 -0.3
613,312 + GFF1749 0.46 -0.3
613,312 + GFF1749 0.46 +0.5
613,312 + GFF1749 0.46 +0.5
613,312 + GFF1749 0.46 -0.7
613,312 + GFF1749 0.46 +1.0
613,312 + GFF1749 0.46 -0.3
613,313 - GFF1749 0.46 +0.3
613,313 - GFF1749 0.46 +0.5
613,313 - GFF1749 0.46 +1.1
613,313 - GFF1749 0.46 -0.1
613,313 - GFF1749 0.46 +0.0
613,313 - GFF1749 0.46 +0.5
613,313 - GFF1749 0.46 -0.4
613,313 - GFF1749 0.46 -0.5
613,313 - GFF1749 0.46 -0.3
613,313 - GFF1749 0.46 -0.4
613,313 - GFF1749 0.46 +0.2
613,313 - GFF1749 0.46 -1.2
613,339 + GFF1749 0.48 -0.2
613,339 + GFF1749 0.48 +1.5
613,340 - GFF1749 0.48 +0.1
613,615 + GFF1749 0.67 -0.9
613,616 - GFF1749 0.67 +1.1
613,616 - GFF1749 0.67 -0.0

Or see this region's nucleotide sequence