Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1721 and GFF1722 are separated by 21 nucleotides GFF1722 and GFF1723 are separated by 11 nucleotides GFF1723 and GFF1724 are separated by 64 nucleotides GFF1724 and GFF1725 are separated by 34 nucleotides
GFF1721 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 578,218 to 579,348
GFF1721
GFF1722 - Short-chain dehydrogenase/reductase SDR, at 579,370 to 580,038
GFF1722
GFF1723 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 580,050 to 581,234
GFF1723
GFF1724 - Carbonic anhydrase (EC 4.2.1.1), at 581,299 to 581,958
GFF1724
GFF1725 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 581,993 to 583,174
GFF1725
Position (kb) 580
581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 579.054 kb on - strand, within GFF1721 at 579.158 kb on + strand, within GFF1721 at 579.158 kb on + strand, within GFF1721 at 579.158 kb on + strand, within GFF1721 at 579.159 kb on - strand, within GFF1721 at 579.159 kb on - strand, within GFF1721 at 579.159 kb on - strand, within GFF1721 at 579.159 kb on - strand, within GFF1721 at 579.203 kb on + strand, within GFF1721 at 579.204 kb on - strand, within GFF1721 at 579.204 kb on - strand, within GFF1721 at 579.204 kb on - strand, within GFF1721 at 579.351 kb on - strand at 579.551 kb on + strand, within GFF1722 at 579.551 kb on + strand, within GFF1722 at 579.552 kb on - strand, within GFF1722 at 579.605 kb on + strand, within GFF1722 at 579.812 kb on + strand, within GFF1722 at 579.812 kb on + strand, within GFF1722 at 579.812 kb on + strand, within GFF1722 at 579.812 kb on + strand, within GFF1722 at 579.812 kb on + strand, within GFF1722 at 579.813 kb on - strand, within GFF1722 at 579.813 kb on - strand, within GFF1722 at 579.813 kb on - strand, within GFF1722 at 579.813 kb on - strand, within GFF1722 at 579.813 kb on - strand, within GFF1722 at 579.813 kb on - strand, within GFF1722 at 579.813 kb on - strand, within GFF1722 at 579.813 kb on - strand, within GFF1722 at 580.362 kb on - strand, within GFF1723 at 580.587 kb on + strand, within GFF1723 at 580.723 kb on + strand, within GFF1723 at 580.723 kb on + strand, within GFF1723 at 580.723 kb on + strand, within GFF1723 at 580.723 kb on + strand, within GFF1723 at 580.723 kb on + strand, within GFF1723 at 580.723 kb on + strand, within GFF1723 at 580.723 kb on + strand, within GFF1723 at 580.724 kb on + strand, within GFF1723 at 580.724 kb on - strand, within GFF1723 at 580.724 kb on - strand, within GFF1723 at 580.724 kb on - strand, within GFF1723 at 580.724 kb on - strand, within GFF1723 at 580.775 kb on - strand, within GFF1723 at 580.775 kb on - strand, within GFF1723 at 580.775 kb on - strand, within GFF1723 at 580.775 kb on - strand, within GFF1723 at 580.810 kb on + strand, within GFF1723 at 580.810 kb on + strand, within GFF1723 at 580.811 kb on - strand, within GFF1723 at 580.811 kb on - strand, within GFF1723 at 580.861 kb on + strand, within GFF1723 at 580.861 kb on + strand, within GFF1723 at 580.862 kb on - strand, within GFF1723 at 580.862 kb on - strand, within GFF1723 at 581.255 kb on - strand at 581.944 kb on + strand at 581.944 kb on + strand at 581.945 kb on - strand at 581.945 kb on - strand at 582.066 kb on + strand at 582.066 kb on + strand at 582.066 kb on + strand at 582.066 kb on + strand at 582.067 kb on - strand at 582.114 kb on + strand, within GFF1725 at 582.114 kb on + strand, within GFF1725 at 582.114 kb on + strand, within GFF1725 at 582.115 kb on - strand, within GFF1725 at 582.115 kb on - strand, within GFF1725 at 582.186 kb on - strand, within GFF1725 at 582.186 kb on - strand, within GFF1725 at 582.186 kb on - strand, within GFF1725 at 582.186 kb on - strand, within GFF1725
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 579,054 - GFF1721 0.74 -0.0 579,158 + GFF1721 0.83 +0.9 579,158 + GFF1721 0.83 -0.3 579,158 + GFF1721 0.83 -2.3 579,159 - GFF1721 0.83 -0.3 579,159 - GFF1721 0.83 +0.2 579,159 - GFF1721 0.83 -0.1 579,159 - GFF1721 0.83 +0.4 579,203 + GFF1721 0.87 +0.1 579,204 - GFF1721 0.87 -0.6 579,204 - GFF1721 0.87 +0.4 579,204 - GFF1721 0.87 -0.1 579,351 - +0.3 579,551 + GFF1722 0.27 -0.3 579,551 + GFF1722 0.27 -0.4 579,552 - GFF1722 0.27 +0.6 579,605 + GFF1722 0.35 +0.4 579,812 + GFF1722 0.66 +0.6 579,812 + GFF1722 0.66 -0.4 579,812 + GFF1722 0.66 +0.1 579,812 + GFF1722 0.66 +0.1 579,812 + GFF1722 0.66 +0.2 579,813 - GFF1722 0.66 -0.7 579,813 - GFF1722 0.66 -0.9 579,813 - GFF1722 0.66 +0.4 579,813 - GFF1722 0.66 +0.5 579,813 - GFF1722 0.66 +0.2 579,813 - GFF1722 0.66 +0.1 579,813 - GFF1722 0.66 +0.9 579,813 - GFF1722 0.66 +0.3 580,362 - GFF1723 0.26 -0.3 580,587 + GFF1723 0.45 +0.3 580,723 + GFF1723 0.57 -0.3 580,723 + GFF1723 0.57 -0.3 580,723 + GFF1723 0.57 +0.0 580,723 + GFF1723 0.57 -0.3 580,723 + GFF1723 0.57 +0.1 580,723 + GFF1723 0.57 -0.3 580,723 + GFF1723 0.57 -0.2 580,724 + GFF1723 0.57 -0.0 580,724 - GFF1723 0.57 -0.5 580,724 - GFF1723 0.57 -0.8 580,724 - GFF1723 0.57 -0.4 580,724 - GFF1723 0.57 +0.6 580,775 - GFF1723 0.61 -0.2 580,775 - GFF1723 0.61 +0.3 580,775 - GFF1723 0.61 +0.1 580,775 - GFF1723 0.61 +0.2 580,810 + GFF1723 0.64 +0.5 580,810 + GFF1723 0.64 -0.5 580,811 - GFF1723 0.64 +0.3 580,811 - GFF1723 0.64 -0.2 580,861 + GFF1723 0.68 -0.1 580,861 + GFF1723 0.68 +1.1 580,862 - GFF1723 0.69 -0.1 580,862 - GFF1723 0.69 -0.2 581,255 - +1.3 581,944 + -3.7 581,944 + -2.1 581,945 - -2.1 581,945 - -2.2 582,066 + +0.2 582,066 + -0.3 582,066 + +0.8 582,066 + -0.1 582,067 - -0.4 582,114 + GFF1725 0.10 -0.3 582,114 + GFF1725 0.10 -0.2 582,114 + GFF1725 0.10 +1.2 582,115 - GFF1725 0.10 -0.3 582,115 - GFF1725 0.10 +0.1 582,186 - GFF1725 0.16 -0.6 582,186 - GFF1725 0.16 -0.9 582,186 - GFF1725 0.16 +0.3 582,186 - GFF1725 0.16 -0.8
Or see this region's nucleotide sequence