Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1627

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1626 and GFF1627 are separated by 27 nucleotidesGFF1627 and GFF1628 are separated by 11 nucleotidesGFF1628 and GFF1629 are separated by 14 nucleotides GFF1626 - Glucokinase (EC 2.7.1.2), at 481,515 to 482,528 GFF1626 GFF1627 - Thioredoxin, at 482,556 to 483,002 GFF1627 GFF1628 - hypothetical protein, at 483,014 to 483,196 GFF1628 GFF1629 - COG1565: Uncharacterized conserved protein, at 483,211 to 484,338 GFF1629 Position (kb) 482 483 484Strain fitness (log2 ratio) -2 -1 0 1at 481.567 kb on - strandat 481.711 kb on + strand, within GFF1626at 481.712 kb on - strand, within GFF1626at 482.351 kb on - strand, within GFF1626at 483.024 kb on + strandat 483.969 kb on - strand, within GFF1629

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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481,567 - -0.3
481,711 + GFF1626 0.19 -0.2
481,712 - GFF1626 0.19 -0.8
482,351 - GFF1626 0.82 -0.2
483,024 + +1.1
483,969 - GFF1629 0.67 -2.7

Or see this region's nucleotide sequence