Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF127 and GFF128 are separated by 122 nucleotides GFF128 and GFF129 are separated by 4 nucleotides
GFF127 - transcriptional regulator, MerR family, at 140,882 to 141,814
GFF127
GFF128 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 141,937 to 144,084
GFF128
GFF129 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 144,089 to 145,666
GFF129
Position (kb) 141
142
143
144
145 Strain fitness (log2 ratio) -1
0
1 at 140.988 kb on + strand, within GFF127 at 140.988 kb on + strand, within GFF127 at 141.057 kb on + strand, within GFF127 at 141.057 kb on + strand, within GFF127 at 141.057 kb on + strand, within GFF127 at 141.057 kb on + strand, within GFF127 at 141.058 kb on - strand, within GFF127 at 141.058 kb on - strand, within GFF127 at 141.058 kb on - strand, within GFF127 at 141.058 kb on - strand, within GFF127 at 141.303 kb on + strand, within GFF127 at 141.304 kb on - strand, within GFF127 at 141.304 kb on - strand, within GFF127 at 141.304 kb on - strand, within GFF127 at 141.676 kb on - strand, within GFF127 at 141.903 kb on + strand at 141.904 kb on - strand at 141.904 kb on - strand at 141.904 kb on - strand at 142.051 kb on + strand at 142.052 kb on - strand at 142.052 kb on - strand at 142.198 kb on + strand, within GFF128 at 142.198 kb on + strand, within GFF128 at 142.639 kb on + strand, within GFF128 at 142.640 kb on - strand, within GFF128 at 142.640 kb on - strand, within GFF128 at 142.747 kb on + strand, within GFF128 at 142.747 kb on + strand, within GFF128 at 142.748 kb on + strand, within GFF128 at 144.251 kb on + strand, within GFF129 at 144.254 kb on + strand, within GFF129 at 144.873 kb on - strand, within GFF129 at 144.887 kb on + strand, within GFF129
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 140,988 + GFF127 0.11 +0.4 140,988 + GFF127 0.11 -0.1 141,057 + GFF127 0.19 -0.6 141,057 + GFF127 0.19 -0.6 141,057 + GFF127 0.19 -0.6 141,057 + GFF127 0.19 +0.2 141,058 - GFF127 0.19 +0.4 141,058 - GFF127 0.19 +0.2 141,058 - GFF127 0.19 -0.1 141,058 - GFF127 0.19 -0.1 141,303 + GFF127 0.45 -0.6 141,304 - GFF127 0.45 -1.0 141,304 - GFF127 0.45 +0.1 141,304 - GFF127 0.45 -0.4 141,676 - GFF127 0.85 -0.0 141,903 + -0.9 141,904 - +0.0 141,904 - +0.3 141,904 - +1.5 142,051 + -0.3 142,052 - -0.4 142,052 - +0.1 142,198 + GFF128 0.12 +0.4 142,198 + GFF128 0.12 +0.1 142,639 + GFF128 0.33 -0.3 142,640 - GFF128 0.33 +0.3 142,640 - GFF128 0.33 +1.2 142,747 + GFF128 0.38 -0.4 142,747 + GFF128 0.38 +0.1 142,748 + GFF128 0.38 -0.0 144,251 + GFF129 0.10 +0.2 144,254 + GFF129 0.10 +0.3 144,873 - GFF129 0.50 +1.2 144,887 + GFF129 0.51 +0.3
Or see this region's nucleotide sequence