Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1196 and GFF1197 are separated by 99 nucleotides GFF1197 and GFF1198 are separated by 1 nucleotides
GFF1196 - Signal transduction histidine kinase, at 54,929 to 57,040
GFF1196
GFF1197 - Putative formate dehydrogenase-specific chaperone, at 57,140 to 57,760
GFF1197
GFF1198 - Iron-sulfur cluster-binding protein, at 57,762 to 59,831
GFF1198
Position (kb) 57
58 Strain fitness (log2 ratio) -1
0
1 at 56.505 kb on - strand, within GFF1196 at 56.531 kb on + strand, within GFF1196 at 56.531 kb on + strand, within GFF1196 at 57.086 kb on + strand at 57.087 kb on - strand at 57.087 kb on - strand at 57.087 kb on - strand at 57.087 kb on - strand at 57.151 kb on + strand at 57.151 kb on + strand at 57.152 kb on - strand at 57.211 kb on - strand, within GFF1197 at 57.339 kb on + strand, within GFF1197 at 57.340 kb on - strand, within GFF1197 at 57.340 kb on - strand, within GFF1197 at 57.361 kb on - strand, within GFF1197 at 57.361 kb on - strand, within GFF1197 at 57.361 kb on - strand, within GFF1197 at 57.471 kb on + strand, within GFF1197 at 57.471 kb on + strand, within GFF1197 at 57.471 kb on + strand, within GFF1197 at 57.472 kb on - strand, within GFF1197 at 57.528 kb on + strand, within GFF1197 at 57.673 kb on - strand, within GFF1197 at 57.673 kb on - strand, within GFF1197 at 57.673 kb on - strand, within GFF1197 at 57.675 kb on + strand, within GFF1197 at 57.675 kb on + strand, within GFF1197 at 57.676 kb on - strand, within GFF1197 at 57.696 kb on + strand, within GFF1197 at 57.696 kb on + strand, within GFF1197 at 57.696 kb on + strand, within GFF1197 at 57.697 kb on - strand, within GFF1197 at 57.697 kb on - strand, within GFF1197 at 57.697 kb on - strand, within GFF1197 at 57.697 kb on - strand, within GFF1197 at 57.799 kb on + strand at 57.800 kb on - strand at 57.800 kb on - strand at 57.943 kb on + strand at 57.943 kb on - strand at 58.709 kb on - strand, within GFF1198 at 58.759 kb on + strand, within GFF1198
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 56,505 - GFF1196 0.75 +0.1 56,531 + GFF1196 0.76 -1.0 56,531 + GFF1196 0.76 -0.5 57,086 + -0.5 57,087 - +0.9 57,087 - +0.5 57,087 - +0.2 57,087 - +0.1 57,151 + -0.2 57,151 + -1.3 57,152 - -0.2 57,211 - GFF1197 0.11 -0.2 57,339 + GFF1197 0.32 +1.7 57,340 - GFF1197 0.32 -0.1 57,340 - GFF1197 0.32 -1.0 57,361 - GFF1197 0.36 -0.2 57,361 - GFF1197 0.36 -0.3 57,361 - GFF1197 0.36 -0.6 57,471 + GFF1197 0.53 -0.0 57,471 + GFF1197 0.53 -0.4 57,471 + GFF1197 0.53 -0.2 57,472 - GFF1197 0.53 +0.3 57,528 + GFF1197 0.62 +0.0 57,673 - GFF1197 0.86 -0.1 57,673 - GFF1197 0.86 -0.9 57,673 - GFF1197 0.86 -0.0 57,675 + GFF1197 0.86 +0.2 57,675 + GFF1197 0.86 -1.0 57,676 - GFF1197 0.86 +0.7 57,696 + GFF1197 0.90 -0.5 57,696 + GFF1197 0.90 -0.9 57,696 + GFF1197 0.90 +0.5 57,697 - GFF1197 0.90 -0.2 57,697 - GFF1197 0.90 +0.6 57,697 - GFF1197 0.90 -0.7 57,697 - GFF1197 0.90 -0.7 57,799 + -0.2 57,800 - -0.1 57,800 - +0.1 57,943 + +0.5 57,943 - -0.3 58,709 - GFF1198 0.46 +0.0 58,759 + GFF1198 0.48 -0.7
Or see this region's nucleotide sequence