Experiment: Xylan from corn core 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05153 and BACOVA_05154 are separated by 139 nucleotides BACOVA_05154 and BACOVA_05155 are separated by 130 nucleotides BACOVA_05155 and BACOVA_05156 are separated by 122 nucleotides
BACOVA_05153: BACOVA_05153 - glutamate--ammonia ligase, catalytic domain protein, at 633,715 to 635,904
_05153
BACOVA_05154: BACOVA_05154 - hypothetical protein, at 636,044 to 636,517
_05154
BACOVA_05155: BACOVA_05155 - hypothetical protein, at 636,648 to 636,818
_05155
BACOVA_05156: BACOVA_05156 - hypothetical protein, at 636,941 to 637,069
_05156
Position (kb) 636
637 Strain fitness (log2 ratio) -2
-1
0
1 at 635.227 kb on - strand, within BACOVA_05153 at 635.230 kb on + strand, within BACOVA_05153 at 635.243 kb on - strand, within BACOVA_05153 at 635.277 kb on + strand, within BACOVA_05153 at 635.282 kb on - strand, within BACOVA_05153 at 635.389 kb on - strand, within BACOVA_05153 at 635.431 kb on + strand, within BACOVA_05153 at 635.466 kb on - strand, within BACOVA_05153 at 635.718 kb on + strand at 635.725 kb on - strand at 635.982 kb on - strand at 636.012 kb on + strand at 636.039 kb on + strand at 636.045 kb on + strand at 636.070 kb on + strand at 636.103 kb on + strand, within BACOVA_05154 at 636.103 kb on + strand, within BACOVA_05154 at 636.106 kb on - strand, within BACOVA_05154 at 636.209 kb on - strand, within BACOVA_05154 at 636.236 kb on + strand, within BACOVA_05154 at 636.237 kb on - strand, within BACOVA_05154 at 636.353 kb on + strand, within BACOVA_05154 at 636.353 kb on + strand, within BACOVA_05154 at 636.354 kb on - strand, within BACOVA_05154 at 636.471 kb on - strand at 636.492 kb on - strand at 636.500 kb on - strand at 636.517 kb on + strand at 636.520 kb on + strand at 636.521 kb on - strand at 636.522 kb on + strand at 636.527 kb on - strand at 636.527 kb on - strand at 636.558 kb on - strand at 636.616 kb on + strand at 636.617 kb on - strand at 636.648 kb on - strand at 636.722 kb on + strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.784 kb on - strand, within BACOVA_05155 at 636.786 kb on - strand, within BACOVA_05155 at 636.806 kb on + strand at 636.807 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.812 kb on - strand at 636.812 kb on - strand at 636.813 kb on + strand at 636.813 kb on + strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.816 kb on + strand at 636.816 kb on + strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.820 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.830 kb on - strand at 636.867 kb on - strand at 636.867 kb on - strand at 636.871 kb on + strand at 636.871 kb on + strand at 636.894 kb on + strand at 636.901 kb on - strand at 636.901 kb on - strand at 636.979 kb on + strand, within BACOVA_05156 at 636.980 kb on - strand, within BACOVA_05156 at 637.053 kb on + strand, within BACOVA_05156 at 637.064 kb on + strand at 637.085 kb on - strand at 637.094 kb on - strand at 637.096 kb on - strand at 637.096 kb on - strand at 637.096 kb on - strand at 637.191 kb on - strand at 637.191 kb on - strand at 637.222 kb on - strand at 637.397 kb on - strand at 637.397 kb on - strand at 637.399 kb on - strand at 637.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/mL (C) remove 635,227 - BACOVA_05153 0.69 -1.4 635,230 + BACOVA_05153 0.69 -0.4 635,243 - BACOVA_05153 0.70 -1.3 635,277 + BACOVA_05153 0.71 -1.1 635,282 - BACOVA_05153 0.72 -1.4 635,389 - BACOVA_05153 0.76 -0.9 635,431 + BACOVA_05153 0.78 -0.7 635,466 - BACOVA_05153 0.80 -0.9 635,718 + -0.7 635,725 - -2.0 635,982 - +0.1 636,012 + +1.1 636,039 + +0.6 636,045 + -0.6 636,070 + -0.3 636,103 + BACOVA_05154 0.12 +0.3 636,103 + BACOVA_05154 0.12 -0.8 636,106 - BACOVA_05154 0.13 +0.3 636,209 - BACOVA_05154 0.35 +0.4 636,236 + BACOVA_05154 0.41 +0.1 636,237 - BACOVA_05154 0.41 -0.1 636,353 + BACOVA_05154 0.65 +0.2 636,353 + BACOVA_05154 0.65 +0.0 636,354 - BACOVA_05154 0.65 -0.2 636,471 - -0.6 636,492 - +0.4 636,500 - -0.9 636,517 + -0.4 636,520 + +0.4 636,521 - -0.2 636,522 + -1.4 636,527 - -1.0 636,527 - -0.7 636,558 - +0.5 636,616 + -0.7 636,617 - +1.2 636,648 - +0.5 636,722 + BACOVA_05155 0.43 -1.4 636,723 - BACOVA_05155 0.44 -0.6 636,723 - BACOVA_05155 0.44 +0.1 636,761 - BACOVA_05155 0.66 +0.8 636,761 - BACOVA_05155 0.66 +0.2 636,784 - BACOVA_05155 0.80 -0.2 636,786 - BACOVA_05155 0.81 -0.0 636,806 + +0.1 636,807 - -0.6 636,810 - +0.1 636,810 - -0.3 636,810 - -0.4 636,812 - -0.1 636,812 - -0.2 636,813 + +0.3 636,813 + -0.8 636,814 - +1.2 636,814 - -0.2 636,814 - +0.6 636,814 - +1.3 636,816 + +0.6 636,816 + -2.7 636,817 - -0.8 636,817 - -0.8 636,817 - -0.1 636,817 - +0.0 636,820 - -0.4 636,825 - +0.2 636,825 - +0.6 636,825 - -2.0 636,827 - +1.2 636,827 - +0.5 636,827 - -0.6 636,830 - -0.7 636,867 - -0.1 636,867 - -0.4 636,871 + -0.2 636,871 + +0.2 636,894 + +0.6 636,901 - -0.3 636,901 - +0.1 636,979 + BACOVA_05156 0.29 -0.6 636,980 - BACOVA_05156 0.30 -0.6 637,053 + BACOVA_05156 0.87 -0.6 637,064 + -1.2 637,085 - -1.1 637,094 - -1.0 637,096 - +0.0 637,096 - -0.6 637,096 - +0.4 637,191 - +0.5 637,191 - +0.2 637,222 - -1.0 637,397 - +0.2 637,397 - +0.1 637,399 - -1.8 637,461 + +0.6
Or see this region's nucleotide sequence