Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04973

Experiment: Xylan from corn core 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04972 and BACOVA_04973 are separated by 129 nucleotidesBACOVA_04973 and BACOVA_04974 are separated by 244 nucleotides BACOVA_04972: BACOVA_04972 - GDSL-like protein, at 416,911 to 418,545 _04972 BACOVA_04973: BACOVA_04973 - glycosyl hydrolase, family 88, at 418,675 to 419,817 _04973 BACOVA_04974: BACOVA_04974 - FG-GAP repeat protein, at 420,062 to 421,903 _04974 Position (kb) 418 419 420Strain fitness (log2 ratio) -2 -1 0 1 2at 417.766 kb on - strand, within BACOVA_04972at 417.768 kb on - strand, within BACOVA_04972at 417.768 kb on - strand, within BACOVA_04972at 417.813 kb on + strand, within BACOVA_04972at 417.937 kb on - strand, within BACOVA_04972at 417.974 kb on - strand, within BACOVA_04972at 417.996 kb on + strand, within BACOVA_04972at 417.996 kb on + strand, within BACOVA_04972at 417.997 kb on - strand, within BACOVA_04972at 417.998 kb on + strand, within BACOVA_04972at 418.007 kb on + strand, within BACOVA_04972at 418.008 kb on - strand, within BACOVA_04972at 418.008 kb on - strand, within BACOVA_04972at 418.011 kb on + strand, within BACOVA_04972at 418.012 kb on - strand, within BACOVA_04972at 418.012 kb on - strand, within BACOVA_04972at 418.015 kb on + strand, within BACOVA_04972at 418.016 kb on - strand, within BACOVA_04972at 418.016 kb on - strand, within BACOVA_04972at 418.049 kb on - strand, within BACOVA_04972at 418.060 kb on - strand, within BACOVA_04972at 418.060 kb on - strand, within BACOVA_04972at 418.106 kb on + strand, within BACOVA_04972at 418.106 kb on + strand, within BACOVA_04972at 418.141 kb on - strand, within BACOVA_04972at 418.159 kb on + strand, within BACOVA_04972at 418.171 kb on + strand, within BACOVA_04972at 418.171 kb on + strand, within BACOVA_04972at 418.171 kb on + strand, within BACOVA_04972at 418.172 kb on - strand, within BACOVA_04972at 418.240 kb on - strand, within BACOVA_04972at 418.274 kb on + strand, within BACOVA_04972at 418.309 kb on + strand, within BACOVA_04972at 418.340 kb on - strand, within BACOVA_04972at 418.407 kb on + strandat 418.501 kb on - strandat 418.519 kb on + strandat 418.520 kb on - strandat 418.520 kb on - strandat 418.520 kb on - strandat 418.520 kb on - strandat 418.520 kb on - strandat 418.520 kb on - strandat 418.520 kb on - strandat 418.521 kb on + strandat 418.521 kb on + strandat 418.521 kb on + strandat 418.521 kb on + strandat 418.604 kb on + strandat 418.604 kb on + strandat 418.616 kb on - strandat 418.623 kb on - strandat 418.623 kb on - strandat 418.627 kb on - strandat 418.656 kb on - strandat 418.671 kb on + strandat 418.676 kb on + strandat 418.752 kb on + strandat 418.752 kb on + strandat 418.755 kb on - strandat 418.803 kb on - strand, within BACOVA_04973at 418.881 kb on + strand, within BACOVA_04973at 418.882 kb on - strand, within BACOVA_04973at 418.918 kb on - strand, within BACOVA_04973at 418.923 kb on - strand, within BACOVA_04973at 418.931 kb on - strand, within BACOVA_04973at 419.054 kb on + strand, within BACOVA_04973at 419.055 kb on - strand, within BACOVA_04973at 419.096 kb on - strand, within BACOVA_04973at 419.116 kb on + strand, within BACOVA_04973at 419.117 kb on - strand, within BACOVA_04973at 419.117 kb on - strand, within BACOVA_04973at 419.166 kb on + strand, within BACOVA_04973at 419.166 kb on + strand, within BACOVA_04973at 419.166 kb on + strand, within BACOVA_04973at 419.252 kb on + strand, within BACOVA_04973at 419.253 kb on - strand, within BACOVA_04973at 419.255 kb on + strand, within BACOVA_04973at 419.255 kb on + strand, within BACOVA_04973at 419.256 kb on - strand, within BACOVA_04973at 419.258 kb on + strand, within BACOVA_04973at 419.263 kb on - strand, within BACOVA_04973at 419.263 kb on - strand, within BACOVA_04973at 419.274 kb on + strand, within BACOVA_04973at 419.275 kb on - strand, within BACOVA_04973at 419.443 kb on - strand, within BACOVA_04973at 419.448 kb on + strand, within BACOVA_04973at 419.449 kb on - strand, within BACOVA_04973at 419.456 kb on + strand, within BACOVA_04973at 419.540 kb on + strand, within BACOVA_04973at 419.540 kb on + strand, within BACOVA_04973at 419.541 kb on - strand, within BACOVA_04973at 419.551 kb on - strand, within BACOVA_04973at 419.551 kb on - strand, within BACOVA_04973at 419.551 kb on - strand, within BACOVA_04973at 419.551 kb on - strand, within BACOVA_04973at 419.556 kb on - strand, within BACOVA_04973at 419.570 kb on + strand, within BACOVA_04973at 419.570 kb on + strand, within BACOVA_04973at 419.575 kb on - strand, within BACOVA_04973at 419.575 kb on - strand, within BACOVA_04973at 419.579 kb on + strand, within BACOVA_04973at 419.579 kb on + strand, within BACOVA_04973at 419.601 kb on - strand, within BACOVA_04973at 419.601 kb on - strand, within BACOVA_04973at 419.603 kb on + strand, within BACOVA_04973at 419.604 kb on - strand, within BACOVA_04973at 419.605 kb on + strand, within BACOVA_04973at 419.621 kb on - strand, within BACOVA_04973at 419.622 kb on + strand, within BACOVA_04973at 419.622 kb on + strand, within BACOVA_04973at 419.622 kb on + strand, within BACOVA_04973at 419.622 kb on + strand, within BACOVA_04973at 419.658 kb on + strand, within BACOVA_04973at 419.659 kb on - strand, within BACOVA_04973at 419.664 kb on - strand, within BACOVA_04973at 419.682 kb on + strand, within BACOVA_04973at 419.687 kb on + strand, within BACOVA_04973at 419.687 kb on + strand, within BACOVA_04973at 419.803 kb on + strandat 419.821 kb on - strandat 419.825 kb on + strandat 419.826 kb on - strandat 419.826 kb on - strandat 419.856 kb on + strandat 419.856 kb on + strandat 419.856 kb on + strandat 419.954 kb on + strandat 419.955 kb on - strandat 419.966 kb on + strandat 419.966 kb on + strandat 419.983 kb on + strandat 419.983 kb on + strandat 419.986 kb on - strandat 419.992 kb on - strandat 420.061 kb on + strandat 420.061 kb on + strandat 420.103 kb on + strandat 420.104 kb on - strandat 420.104 kb on - strandat 420.104 kb on - strandat 420.171 kb on + strandat 420.179 kb on - strandat 420.218 kb on + strandat 420.253 kb on + strand, within BACOVA_04974at 420.258 kb on - strand, within BACOVA_04974at 420.340 kb on - strand, within BACOVA_04974at 420.384 kb on - strand, within BACOVA_04974at 420.525 kb on - strand, within BACOVA_04974at 420.553 kb on + strand, within BACOVA_04974at 420.553 kb on + strand, within BACOVA_04974at 420.554 kb on - strand, within BACOVA_04974at 420.584 kb on - strand, within BACOVA_04974at 420.594 kb on + strand, within BACOVA_04974at 420.594 kb on + strand, within BACOVA_04974at 420.594 kb on + strand, within BACOVA_04974at 420.595 kb on - strand, within BACOVA_04974at 420.595 kb on - strand, within BACOVA_04974at 420.595 kb on - strand, within BACOVA_04974at 420.596 kb on + strand, within BACOVA_04974at 420.608 kb on + strand, within BACOVA_04974at 420.611 kb on - strand, within BACOVA_04974at 420.611 kb on - strand, within BACOVA_04974at 420.611 kb on - strand, within BACOVA_04974at 420.631 kb on - strand, within BACOVA_04974at 420.652 kb on + strand, within BACOVA_04974at 420.652 kb on + strand, within BACOVA_04974at 420.653 kb on - strand, within BACOVA_04974at 420.653 kb on - strand, within BACOVA_04974at 420.653 kb on - strand, within BACOVA_04974at 420.674 kb on + strand, within BACOVA_04974at 420.675 kb on - strand, within BACOVA_04974at 420.685 kb on + strand, within BACOVA_04974at 420.686 kb on - strand, within BACOVA_04974

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/mL (C)
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417,766 - BACOVA_04972 0.52 -0.0
417,768 - BACOVA_04972 0.52 +0.0
417,768 - BACOVA_04972 0.52 -0.4
417,813 + BACOVA_04972 0.55 +0.9
417,937 - BACOVA_04972 0.63 -0.6
417,974 - BACOVA_04972 0.65 +1.6
417,996 + BACOVA_04972 0.66 +1.3
417,996 + BACOVA_04972 0.66 -0.2
417,997 - BACOVA_04972 0.66 +0.9
417,998 + BACOVA_04972 0.66 -0.5
418,007 + BACOVA_04972 0.67 -0.3
418,008 - BACOVA_04972 0.67 -0.7
418,008 - BACOVA_04972 0.67 +0.2
418,011 + BACOVA_04972 0.67 +0.2
418,012 - BACOVA_04972 0.67 -1.0
418,012 - BACOVA_04972 0.67 +0.8
418,015 + BACOVA_04972 0.68 +0.1
418,016 - BACOVA_04972 0.68 +0.0
418,016 - BACOVA_04972 0.68 -0.5
418,049 - BACOVA_04972 0.70 +0.2
418,060 - BACOVA_04972 0.70 -0.9
418,060 - BACOVA_04972 0.70 +0.3
418,106 + BACOVA_04972 0.73 +0.3
418,106 + BACOVA_04972 0.73 -0.2
418,141 - BACOVA_04972 0.75 -0.6
418,159 + BACOVA_04972 0.76 -0.2
418,171 + BACOVA_04972 0.77 -0.3
418,171 + BACOVA_04972 0.77 +0.7
418,171 + BACOVA_04972 0.77 -0.1
418,172 - BACOVA_04972 0.77 -0.9
418,240 - BACOVA_04972 0.81 +0.7
418,274 + BACOVA_04972 0.83 -0.2
418,309 + BACOVA_04972 0.86 -0.2
418,340 - BACOVA_04972 0.87 -0.5
418,407 + -0.9
418,501 - +0.6
418,519 + +0.9
418,520 - +0.9
418,520 - +0.0
418,520 - -0.7
418,520 - +0.3
418,520 - -0.6
418,520 - +0.3
418,520 - -0.6
418,521 + -0.1
418,521 + -0.6
418,521 + -0.5
418,521 + -0.1
418,604 + +0.8
418,604 + -0.7
418,616 - +1.9
418,623 - +1.3
418,623 - +0.5
418,627 - -0.2
418,656 - +0.0
418,671 + -0.7
418,676 + -1.1
418,752 + +0.0
418,752 + +0.8
418,755 - -0.6
418,803 - BACOVA_04973 0.11 -0.2
418,881 + BACOVA_04973 0.18 -0.6
418,882 - BACOVA_04973 0.18 +1.3
418,918 - BACOVA_04973 0.21 +0.9
418,923 - BACOVA_04973 0.22 -0.9
418,931 - BACOVA_04973 0.22 -0.4
419,054 + BACOVA_04973 0.33 -0.2
419,055 - BACOVA_04973 0.33 +0.6
419,096 - BACOVA_04973 0.37 -0.2
419,116 + BACOVA_04973 0.39 -0.2
419,117 - BACOVA_04973 0.39 -0.5
419,117 - BACOVA_04973 0.39 -0.2
419,166 + BACOVA_04973 0.43 -0.2
419,166 + BACOVA_04973 0.43 +0.4
419,166 + BACOVA_04973 0.43 +1.6
419,252 + BACOVA_04973 0.50 +0.2
419,253 - BACOVA_04973 0.51 -0.4
419,255 + BACOVA_04973 0.51 +0.4
419,255 + BACOVA_04973 0.51 -0.3
419,256 - BACOVA_04973 0.51 +0.2
419,258 + BACOVA_04973 0.51 +0.1
419,263 - BACOVA_04973 0.51 -0.7
419,263 - BACOVA_04973 0.51 -0.5
419,274 + BACOVA_04973 0.52 -0.3
419,275 - BACOVA_04973 0.52 +0.5
419,443 - BACOVA_04973 0.67 -0.1
419,448 + BACOVA_04973 0.68 -0.7
419,449 - BACOVA_04973 0.68 +0.0
419,456 + BACOVA_04973 0.68 -0.4
419,540 + BACOVA_04973 0.76 +0.1
419,540 + BACOVA_04973 0.76 -1.1
419,541 - BACOVA_04973 0.76 +0.4
419,551 - BACOVA_04973 0.77 -1.1
419,551 - BACOVA_04973 0.77 +0.1
419,551 - BACOVA_04973 0.77 -0.1
419,551 - BACOVA_04973 0.77 +0.3
419,556 - BACOVA_04973 0.77 +1.0
419,570 + BACOVA_04973 0.78 -0.3
419,570 + BACOVA_04973 0.78 +1.2
419,575 - BACOVA_04973 0.79 +0.1
419,575 - BACOVA_04973 0.79 -1.7
419,579 + BACOVA_04973 0.79 +0.2
419,579 + BACOVA_04973 0.79 -1.1
419,601 - BACOVA_04973 0.81 -1.2
419,601 - BACOVA_04973 0.81 +0.7
419,603 + BACOVA_04973 0.81 -0.1
419,604 - BACOVA_04973 0.81 -0.5
419,605 + BACOVA_04973 0.81 -2.3
419,621 - BACOVA_04973 0.83 +0.7
419,622 + BACOVA_04973 0.83 -1.2
419,622 + BACOVA_04973 0.83 +0.2
419,622 + BACOVA_04973 0.83 +0.7
419,622 + BACOVA_04973 0.83 +0.5
419,658 + BACOVA_04973 0.86 -0.2
419,659 - BACOVA_04973 0.86 -0.8
419,664 - BACOVA_04973 0.87 +0.7
419,682 + BACOVA_04973 0.88 +0.1
419,687 + BACOVA_04973 0.89 -0.9
419,687 + BACOVA_04973 0.89 +0.9
419,803 + +0.0
419,821 - -0.4
419,825 + -0.4
419,826 - -0.6
419,826 - -0.0
419,856 + +0.7
419,856 + +1.3
419,856 + -0.0
419,954 + +0.6
419,955 - -0.2
419,966 + +0.3
419,966 + -0.7
419,983 + +0.0
419,983 + -0.7
419,986 - -0.8
419,992 - -0.6
420,061 + -0.7
420,061 + +0.0
420,103 + +0.4
420,104 - -0.1
420,104 - +0.3
420,104 - +1.3
420,171 + -0.4
420,179 - +0.3
420,218 + -0.1
420,253 + BACOVA_04974 0.10 -0.1
420,258 - BACOVA_04974 0.11 -0.2
420,340 - BACOVA_04974 0.15 +0.3
420,384 - BACOVA_04974 0.17 -2.4
420,525 - BACOVA_04974 0.25 -0.8
420,553 + BACOVA_04974 0.27 +1.2
420,553 + BACOVA_04974 0.27 -0.1
420,554 - BACOVA_04974 0.27 +0.3
420,584 - BACOVA_04974 0.28 -0.6
420,594 + BACOVA_04974 0.29 +0.5
420,594 + BACOVA_04974 0.29 +0.1
420,594 + BACOVA_04974 0.29 -0.6
420,595 - BACOVA_04974 0.29 +1.1
420,595 - BACOVA_04974 0.29 -1.5
420,595 - BACOVA_04974 0.29 +0.4
420,596 + BACOVA_04974 0.29 -0.5
420,608 + BACOVA_04974 0.30 -0.8
420,611 - BACOVA_04974 0.30 +0.6
420,611 - BACOVA_04974 0.30 -2.1
420,611 - BACOVA_04974 0.30 +0.4
420,631 - BACOVA_04974 0.31 -1.1
420,652 + BACOVA_04974 0.32 -0.4
420,652 + BACOVA_04974 0.32 -0.3
420,653 - BACOVA_04974 0.32 -0.1
420,653 - BACOVA_04974 0.32 +0.2
420,653 - BACOVA_04974 0.32 -0.4
420,674 + BACOVA_04974 0.33 +0.1
420,675 - BACOVA_04974 0.33 +0.9
420,685 + BACOVA_04974 0.34 +0.1
420,686 - BACOVA_04974 0.34 -0.6

Or see this region's nucleotide sequence