Experiment: Xylan from corn core 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03646 and BACOVA_03647 are separated by 687 nucleotides BACOVA_03647 and BACOVA_03648 are separated by 87 nucleotides BACOVA_03648 and BACOVA_03649 are separated by 5 nucleotides
BACOVA_03646: BACOVA_03646 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 468,925 to 473,031
_03646
BACOVA_03647: BACOVA_03647 - Sigma-54 interaction domain protein, at 473,719 to 475,092
_03647
BACOVA_03648: BACOVA_03648 - peptidyl-prolyl cis-trans isomerase, cyclophilin-type, at 475,180 to 476,019
_03648
BACOVA_03649: BACOVA_03649 - peptidase M16 inactive domain protein, at 476,025 to 477,263
_03649
Position (kb) 473
474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 472.723 kb on - strand at 472.724 kb on + strand at 472.734 kb on + strand at 472.735 kb on - strand at 472.735 kb on - strand at 472.740 kb on + strand at 472.794 kb on + strand at 472.795 kb on - strand at 472.800 kb on - strand at 472.811 kb on + strand at 472.821 kb on + strand at 472.854 kb on + strand at 472.855 kb on - strand at 472.945 kb on - strand at 472.993 kb on + strand at 472.993 kb on + strand at 472.996 kb on - strand at 472.996 kb on - strand at 472.996 kb on - strand at 472.996 kb on - strand at 473.007 kb on + strand at 473.030 kb on - strand at 473.056 kb on - strand at 473.075 kb on - strand at 473.084 kb on - strand at 473.098 kb on + strand at 473.122 kb on - strand at 473.130 kb on + strand at 473.130 kb on + strand at 473.142 kb on - strand at 473.155 kb on - strand at 473.155 kb on - strand at 473.292 kb on - strand at 473.331 kb on + strand at 473.342 kb on + strand at 473.342 kb on + strand at 473.343 kb on - strand at 473.353 kb on + strand at 473.354 kb on - strand at 473.354 kb on - strand at 473.354 kb on - strand at 473.364 kb on + strand at 473.365 kb on - strand at 473.371 kb on + strand at 473.387 kb on - strand at 473.397 kb on + strand at 473.398 kb on - strand at 473.406 kb on + strand at 473.408 kb on + strand at 473.414 kb on + strand at 473.424 kb on - strand at 473.457 kb on + strand at 473.457 kb on + strand at 473.458 kb on - strand at 473.476 kb on - strand at 473.486 kb on + strand at 473.487 kb on - strand at 473.487 kb on - strand at 473.491 kb on + strand at 473.492 kb on - strand at 473.498 kb on - strand at 473.498 kb on - strand at 473.500 kb on - strand at 473.509 kb on - strand at 473.530 kb on + strand at 473.563 kb on - strand at 473.563 kb on - strand at 473.583 kb on - strand at 473.586 kb on + strand at 473.634 kb on - strand at 473.638 kb on - strand at 473.638 kb on - strand at 473.657 kb on + strand at 473.661 kb on + strand at 473.699 kb on - strand at 473.704 kb on + strand at 473.723 kb on - strand at 473.723 kb on - strand at 473.723 kb on - strand at 473.723 kb on - strand at 473.729 kb on - strand at 473.731 kb on - strand at 473.733 kb on + strand at 473.749 kb on - strand at 473.832 kb on + strand at 474.002 kb on + strand, within BACOVA_03647 at 474.003 kb on - strand, within BACOVA_03647 at 474.153 kb on + strand, within BACOVA_03647 at 474.161 kb on + strand, within BACOVA_03647 at 474.234 kb on + strand, within BACOVA_03647 at 474.235 kb on - strand, within BACOVA_03647 at 474.235 kb on - strand, within BACOVA_03647 at 474.235 kb on - strand, within BACOVA_03647 at 474.255 kb on + strand, within BACOVA_03647 at 474.256 kb on - strand, within BACOVA_03647 at 474.305 kb on - strand, within BACOVA_03647 at 474.321 kb on + strand, within BACOVA_03647 at 474.322 kb on - strand, within BACOVA_03647 at 474.349 kb on - strand, within BACOVA_03647 at 474.349 kb on - strand, within BACOVA_03647 at 474.351 kb on + strand, within BACOVA_03647 at 474.352 kb on - strand, within BACOVA_03647 at 474.352 kb on - strand, within BACOVA_03647 at 474.469 kb on + strand, within BACOVA_03647 at 474.501 kb on + strand, within BACOVA_03647 at 474.502 kb on - strand, within BACOVA_03647 at 474.513 kb on + strand, within BACOVA_03647 at 474.514 kb on - strand, within BACOVA_03647 at 474.528 kb on - strand, within BACOVA_03647 at 474.558 kb on + strand, within BACOVA_03647 at 474.558 kb on + strand, within BACOVA_03647 at 474.570 kb on + strand, within BACOVA_03647 at 474.571 kb on - strand, within BACOVA_03647 at 474.571 kb on - strand, within BACOVA_03647 at 474.593 kb on - strand, within BACOVA_03647 at 474.596 kb on + strand, within BACOVA_03647 at 474.596 kb on + strand, within BACOVA_03647 at 474.596 kb on + strand, within BACOVA_03647 at 474.666 kb on + strand, within BACOVA_03647 at 474.675 kb on + strand, within BACOVA_03647 at 474.702 kb on + strand, within BACOVA_03647 at 474.712 kb on - strand, within BACOVA_03647 at 474.795 kb on - strand, within BACOVA_03647 at 474.795 kb on - strand, within BACOVA_03647 at 474.795 kb on - strand, within BACOVA_03647 at 474.836 kb on - strand, within BACOVA_03647 at 474.836 kb on - strand, within BACOVA_03647 at 474.836 kb on - strand, within BACOVA_03647 at 474.863 kb on - strand, within BACOVA_03647 at 474.990 kb on + strand at 475.006 kb on + strand at 475.078 kb on + strand at 475.079 kb on - strand at 475.171 kb on - strand at 475.193 kb on + strand at 475.193 kb on + strand at 475.202 kb on + strand at 475.205 kb on + strand at 475.227 kb on + strand at 475.227 kb on + strand at 475.228 kb on - strand at 475.284 kb on - strand, within BACOVA_03648 at 475.487 kb on + strand, within BACOVA_03648 at 475.488 kb on - strand, within BACOVA_03648 at 475.488 kb on - strand, within BACOVA_03648 at 475.492 kb on + strand, within BACOVA_03648 at 475.493 kb on - strand, within BACOVA_03648 at 475.494 kb on + strand, within BACOVA_03648 at 475.570 kb on - strand, within BACOVA_03648 at 475.609 kb on + strand, within BACOVA_03648 at 475.609 kb on + strand, within BACOVA_03648 at 475.610 kb on - strand, within BACOVA_03648 at 475.613 kb on + strand, within BACOVA_03648 at 475.613 kb on + strand, within BACOVA_03648 at 475.613 kb on + strand, within BACOVA_03648 at 475.613 kb on + strand, within BACOVA_03648 at 475.614 kb on - strand, within BACOVA_03648 at 475.614 kb on - strand, within BACOVA_03648 at 475.624 kb on - strand, within BACOVA_03648 at 475.631 kb on - strand, within BACOVA_03648 at 475.653 kb on + strand, within BACOVA_03648 at 475.654 kb on - strand, within BACOVA_03648 at 475.895 kb on - strand, within BACOVA_03648 at 475.896 kb on + strand, within BACOVA_03648 at 475.896 kb on + strand, within BACOVA_03648 at 475.988 kb on + strand at 475.988 kb on + strand at 476.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/mL (C) remove 472,723 - +1.2 472,724 + -1.4 472,734 + -0.4 472,735 - +1.8 472,735 - +0.2 472,740 + +1.0 472,794 + +0.6 472,795 - +0.0 472,800 - -0.4 472,811 + +0.7 472,821 + +0.1 472,854 + -0.1 472,855 - +0.4 472,945 - -0.1 472,993 + +0.6 472,993 + -0.4 472,996 - -0.5 472,996 - -0.3 472,996 - -0.3 472,996 - +0.3 473,007 + -0.4 473,030 - +1.0 473,056 - +0.6 473,075 - -0.4 473,084 - -0.6 473,098 + -0.2 473,122 - -0.7 473,130 + -0.2 473,130 + -0.1 473,142 - -0.5 473,155 - +0.9 473,155 - +0.2 473,292 - -0.0 473,331 + +0.9 473,342 + -1.0 473,342 + -0.8 473,343 - +0.2 473,353 + -0.2 473,354 - -0.9 473,354 - +1.0 473,354 - -0.3 473,364 + +1.3 473,365 - +0.3 473,371 + +0.4 473,387 - +0.1 473,397 + +0.9 473,398 - -0.8 473,406 + -0.3 473,408 + -0.1 473,414 + -0.7 473,424 - +0.7 473,457 + -2.7 473,457 + -1.1 473,458 - +0.5 473,476 - -0.7 473,486 + +1.1 473,487 - -0.4 473,487 - -0.8 473,491 + +0.1 473,492 - +0.6 473,498 - +0.6 473,498 - +0.4 473,500 - -0.9 473,509 - -0.6 473,530 + -0.1 473,563 - +1.6 473,563 - -0.8 473,583 - -0.7 473,586 + -0.6 473,634 - -0.2 473,638 - +0.1 473,638 - +0.5 473,657 + -1.6 473,661 + +0.5 473,699 - +1.8 473,704 + -0.5 473,723 - -0.6 473,723 - +0.7 473,723 - -0.1 473,723 - -0.4 473,729 - +0.3 473,731 - -0.2 473,733 + +0.0 473,749 - -0.1 473,832 + +0.3 474,002 + BACOVA_03647 0.21 +0.2 474,003 - BACOVA_03647 0.21 +0.1 474,153 + BACOVA_03647 0.32 -0.7 474,161 + BACOVA_03647 0.32 +0.1 474,234 + BACOVA_03647 0.37 -1.0 474,235 - BACOVA_03647 0.38 -0.9 474,235 - BACOVA_03647 0.38 +0.3 474,235 - BACOVA_03647 0.38 +0.2 474,255 + BACOVA_03647 0.39 -0.8 474,256 - BACOVA_03647 0.39 +0.4 474,305 - BACOVA_03647 0.43 -0.2 474,321 + BACOVA_03647 0.44 -0.2 474,322 - BACOVA_03647 0.44 +0.3 474,349 - BACOVA_03647 0.46 -0.4 474,349 - BACOVA_03647 0.46 -0.2 474,351 + BACOVA_03647 0.46 +1.2 474,352 - BACOVA_03647 0.46 +1.3 474,352 - BACOVA_03647 0.46 -0.4 474,469 + BACOVA_03647 0.55 +1.6 474,501 + BACOVA_03647 0.57 +0.0 474,502 - BACOVA_03647 0.57 -0.2 474,513 + BACOVA_03647 0.58 +0.5 474,514 - BACOVA_03647 0.58 -0.3 474,528 - BACOVA_03647 0.59 -1.4 474,558 + BACOVA_03647 0.61 -1.3 474,558 + BACOVA_03647 0.61 -0.1 474,570 + BACOVA_03647 0.62 +1.4 474,571 - BACOVA_03647 0.62 +0.2 474,571 - BACOVA_03647 0.62 -0.6 474,593 - BACOVA_03647 0.64 +0.8 474,596 + BACOVA_03647 0.64 -0.7 474,596 + BACOVA_03647 0.64 -0.9 474,596 + BACOVA_03647 0.64 -0.6 474,666 + BACOVA_03647 0.69 -1.2 474,675 + BACOVA_03647 0.70 +0.5 474,702 + BACOVA_03647 0.72 +0.1 474,712 - BACOVA_03647 0.72 -1.2 474,795 - BACOVA_03647 0.78 +0.6 474,795 - BACOVA_03647 0.78 +1.3 474,795 - BACOVA_03647 0.78 +0.6 474,836 - BACOVA_03647 0.81 -0.7 474,836 - BACOVA_03647 0.81 +0.8 474,836 - BACOVA_03647 0.81 -0.5 474,863 - BACOVA_03647 0.83 +0.1 474,990 + +0.4 475,006 + -2.5 475,078 + +0.5 475,079 - +0.6 475,171 - -1.3 475,193 + -0.4 475,193 + +2.0 475,202 + +0.3 475,205 + -0.4 475,227 + +0.3 475,227 + -0.4 475,228 - +0.1 475,284 - BACOVA_03648 0.12 -1.8 475,487 + BACOVA_03648 0.37 -0.2 475,488 - BACOVA_03648 0.37 +0.2 475,488 - BACOVA_03648 0.37 +0.6 475,492 + BACOVA_03648 0.37 -0.8 475,493 - BACOVA_03648 0.37 -0.8 475,494 + BACOVA_03648 0.37 +0.5 475,570 - BACOVA_03648 0.46 +2.6 475,609 + BACOVA_03648 0.51 +0.5 475,609 + BACOVA_03648 0.51 +0.0 475,610 - BACOVA_03648 0.51 +1.2 475,613 + BACOVA_03648 0.52 +0.0 475,613 + BACOVA_03648 0.52 +1.0 475,613 + BACOVA_03648 0.52 +0.4 475,613 + BACOVA_03648 0.52 +0.8 475,614 - BACOVA_03648 0.52 -0.6 475,614 - BACOVA_03648 0.52 +0.7 475,624 - BACOVA_03648 0.53 -0.5 475,631 - BACOVA_03648 0.54 +0.0 475,653 + BACOVA_03648 0.56 -0.4 475,654 - BACOVA_03648 0.56 +0.0 475,895 - BACOVA_03648 0.85 +2.0 475,896 + BACOVA_03648 0.85 -0.1 475,896 + BACOVA_03648 0.85 +0.2 475,988 + +1.6 475,988 + -1.0 476,042 + -0.2
Or see this region's nucleotide sequence