Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01553

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01551 and MPMX26_01552 are separated by 21 nucleotidesMPMX26_01552 and MPMX26_01553 are separated by 36 nucleotidesMPMX26_01553 and MPMX26_01554 are separated by 61 nucleotides MPMX26_01551: MPMX26_01551 - HTH-type transcriptional regulator HdfR, at 1,607,421 to 1,608,302 _01551 MPMX26_01552: MPMX26_01552 - Protein YrdA, at 1,608,324 to 1,608,938 _01552 MPMX26_01553: MPMX26_01553 - Transcriptional repressor PaaX, at 1,608,975 to 1,609,913 _01553 MPMX26_01554: MPMX26_01554 - Phenylacetate-coenzyme A ligase, at 1,609,975 to 1,611,267 _01554 Position (kb) 1608 1609 1610Strain fitness (log2 ratio) -1 0 1 2at 1609.241 kb on - strand, within MPMX26_01553at 1609.574 kb on - strand, within MPMX26_01553at 1609.574 kb on - strand, within MPMX26_01553at 1609.574 kb on - strand, within MPMX26_01553

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,609,241 - MPMX26_01553 0.28 +0.9
1,609,574 - MPMX26_01553 0.64 +2.5
1,609,574 - MPMX26_01553 0.64 -0.8
1,609,574 - MPMX26_01553 0.64 +1.6

Or see this region's nucleotide sequence