Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF978

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF977 and GFF978 are separated by 156 nucleotidesGFF978 and GFF979 overlap by 4 nucleotidesGFF979 and GFF980 are separated by 40 nucleotides GFF977 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 714,167 to 716,221 GFF977 GFF978 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 716,378 to 717,544 GFF978 GFF979 - Enoyl-CoA hydratase (EC 4.2.1.17), at 717,541 to 718,329 GFF979 GFF980 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 718,370 to 719,977 GFF980 Position (kb) 716 717 718Strain fitness (log2 ratio) -2 -1 0 1at 715.419 kb on + strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.462 kb on + strand, within GFF977at 715.564 kb on - strand, within GFF977at 715.705 kb on - strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.770 kb on - strand, within GFF977at 715.770 kb on - strand, within GFF977at 715.770 kb on - strand, within GFF977at 715.773 kb on + strand, within GFF977at 715.774 kb on - strand, within GFF977at 715.979 kb on - strand, within GFF977at 715.979 kb on - strand, within GFF977at 716.073 kb on + strandat 716.073 kb on + strandat 716.074 kb on - strandat 716.074 kb on - strandat 716.074 kb on - strandat 716.187 kb on - strandat 716.187 kb on - strandat 716.187 kb on - strandat 716.373 kb on + strandat 716.374 kb on - strandat 716.453 kb on + strandat 716.453 kb on + strandat 716.546 kb on + strand, within GFF978at 716.603 kb on + strand, within GFF978at 716.603 kb on + strand, within GFF978at 716.604 kb on - strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.810 kb on + strand, within GFF978at 716.810 kb on + strand, within GFF978at 716.977 kb on + strand, within GFF978at 716.977 kb on + strand, within GFF978at 716.978 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.200 kb on + strand, within GFF978at 717.201 kb on - strand, within GFF978at 717.201 kb on - strand, within GFF978at 717.266 kb on + strand, within GFF978at 717.600 kb on - strandat 717.751 kb on + strand, within GFF979at 717.802 kb on + strand, within GFF979at 717.802 kb on + strand, within GFF979at 717.803 kb on - strand, within GFF979at 717.803 kb on - strand, within GFF979at 717.803 kb on - strand, within GFF979at 717.803 kb on - strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.132 kb on + strand, within GFF979at 718.308 kb on + strandat 718.309 kb on - strandat 718.309 kb on - strandat 718.355 kb on + strandat 718.356 kb on - strandat 718.369 kb on + strandat 718.369 kb on + strandat 718.369 kb on + strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.371 kb on - strandat 718.393 kb on - strandat 718.393 kb on - strandat 718.396 kb on + strandat 718.434 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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715,419 + GFF977 0.61 -0.1
715,420 - GFF977 0.61 -0.0
715,420 - GFF977 0.61 -0.0
715,420 - GFF977 0.61 -0.2
715,420 - GFF977 0.61 -0.7
715,420 - GFF977 0.61 +0.2
715,420 - GFF977 0.61 -0.6
715,462 + GFF977 0.63 +0.7
715,564 - GFF977 0.68 +0.1
715,705 - GFF977 0.75 -1.5
715,769 + GFF977 0.78 -0.9
715,769 + GFF977 0.78 +0.9
715,769 + GFF977 0.78 -0.5
715,769 + GFF977 0.78 +0.6
715,769 + GFF977 0.78 +0.2
715,769 + GFF977 0.78 -0.2
715,769 + GFF977 0.78 +0.3
715,769 + GFF977 0.78 +0.4
715,770 - GFF977 0.78 -1.8
715,770 - GFF977 0.78 -0.5
715,770 - GFF977 0.78 +0.5
715,773 + GFF977 0.78 +0.1
715,774 - GFF977 0.78 +0.9
715,979 - GFF977 0.88 +0.1
715,979 - GFF977 0.88 +0.5
716,073 + -0.1
716,073 + -0.5
716,074 - -1.4
716,074 - -0.4
716,074 - +0.1
716,187 - +0.4
716,187 - -0.1
716,187 - +0.3
716,373 + -0.0
716,374 - -0.0
716,453 + +0.1
716,453 + +0.4
716,546 + GFF978 0.14 +0.3
716,603 + GFF978 0.19 -0.7
716,603 + GFF978 0.19 -0.5
716,604 - GFF978 0.19 -0.1
716,624 + GFF978 0.21 -0.4
716,624 + GFF978 0.21 +0.3
716,624 + GFF978 0.21 -0.7
716,624 + GFF978 0.21 -1.1
716,624 + GFF978 0.21 +0.6
716,625 - GFF978 0.21 -0.1
716,625 - GFF978 0.21 -0.5
716,625 - GFF978 0.21 +0.6
716,810 + GFF978 0.37 +0.0
716,810 + GFF978 0.37 -0.6
716,977 + GFF978 0.51 -0.3
716,977 + GFF978 0.51 -0.6
716,978 - GFF978 0.51 -1.1
717,159 - GFF978 0.67 +0.0
717,159 - GFF978 0.67 -0.1
717,159 - GFF978 0.67 -0.8
717,200 + GFF978 0.70 +0.3
717,201 - GFF978 0.71 -0.2
717,201 - GFF978 0.71 +1.6
717,266 + GFF978 0.76 -0.6
717,600 - +0.2
717,751 + GFF979 0.27 +0.1
717,802 + GFF979 0.33 +0.9
717,802 + GFF979 0.33 +0.2
717,803 - GFF979 0.33 -0.3
717,803 - GFF979 0.33 +0.4
717,803 - GFF979 0.33 -0.7
717,803 - GFF979 0.33 +0.4
718,090 + GFF979 0.70 +0.9
718,090 + GFF979 0.70 -0.3
718,090 + GFF979 0.70 -0.5
718,090 + GFF979 0.70 +0.2
718,090 + GFF979 0.70 +1.2
718,090 + GFF979 0.70 -0.4
718,091 - GFF979 0.70 +0.1
718,091 - GFF979 0.70 -0.4
718,091 - GFF979 0.70 +0.6
718,091 - GFF979 0.70 +0.1
718,091 - GFF979 0.70 +0.1
718,132 + GFF979 0.75 -1.3
718,308 + +1.0
718,309 - +1.0
718,309 - -0.5
718,355 + -0.3
718,356 - -0.4
718,369 + -0.9
718,369 + +0.4
718,369 + -0.7
718,370 - +0.4
718,370 - -0.0
718,370 - -0.9
718,370 - +0.1
718,370 - -0.1
718,370 - +0.6
718,370 - -0.2
718,371 - +0.4
718,393 - -0.8
718,393 - +1.2
718,396 + +0.2
718,434 - +0.4

Or see this region's nucleotide sequence