Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
GFF850 - hypothetical protein, at 560,331 to 562,106
GFF850
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 559.423 kb on - strand at 559.482 kb on + strand at 559.482 kb on + strand at 559.483 kb on - strand at 559.500 kb on + strand at 559.500 kb on + strand at 559.501 kb on - strand at 559.787 kb on - strand at 559.833 kb on + strand at 559.833 kb on + strand at 559.834 kb on - strand at 559.834 kb on - strand at 559.834 kb on - strand at 559.861 kb on + strand at 559.861 kb on + strand at 559.861 kb on + strand at 559.861 kb on + strand at 559.861 kb on + strand at 559.862 kb on - strand at 559.862 kb on - strand at 559.862 kb on - strand at 559.862 kb on - strand at 559.865 kb on + strand at 559.865 kb on + strand at 559.865 kb on + strand at 559.866 kb on - strand at 559.866 kb on - strand at 559.866 kb on - strand at 560.051 kb on + strand at 560.051 kb on + strand at 560.051 kb on + strand at 560.052 kb on - strand at 560.057 kb on - strand at 560.103 kb on + strand at 560.103 kb on + strand at 560.104 kb on - strand at 560.104 kb on - strand at 560.104 kb on - strand at 560.119 kb on + strand at 560.119 kb on + strand at 560.120 kb on - strand at 560.120 kb on - strand at 560.120 kb on - strand at 560.263 kb on + strand at 560.263 kb on + strand at 560.264 kb on - strand at 560.264 kb on - strand at 560.286 kb on + strand at 560.287 kb on - strand at 560.343 kb on + strand at 560.343 kb on + strand at 560.343 kb on + strand at 560.344 kb on - strand at 560.344 kb on - strand at 560.344 kb on - strand at 560.347 kb on + strand at 560.348 kb on - strand at 560.348 kb on - strand at 560.420 kb on + strand at 560.457 kb on - strand at 560.514 kb on + strand, within GFF850 at 560.514 kb on + strand, within GFF850 at 560.515 kb on - strand, within GFF850 at 560.515 kb on - strand, within GFF850 at 560.559 kb on + strand, within GFF850 at 560.559 kb on + strand, within GFF850 at 560.559 kb on + strand, within GFF850 at 560.560 kb on + strand, within GFF850 at 560.560 kb on - strand, within GFF850 at 560.560 kb on - strand, within GFF850 at 560.560 kb on - strand, within GFF850 at 560.560 kb on - strand, within GFF850 at 560.613 kb on + strand, within GFF850 at 560.613 kb on + strand, within GFF850 at 560.614 kb on - strand, within GFF850 at 560.631 kb on + strand, within GFF850 at 560.631 kb on + strand, within GFF850 at 560.632 kb on - strand, within GFF850 at 560.642 kb on + strand, within GFF850 at 560.642 kb on + strand, within GFF850 at 560.649 kb on + strand, within GFF850 at 560.749 kb on - strand, within GFF850 at 560.801 kb on + strand, within GFF850 at 560.801 kb on + strand, within GFF850 at 560.802 kb on - strand, within GFF850 at 560.802 kb on - strand, within GFF850 at 560.845 kb on - strand, within GFF850 at 560.845 kb on - strand, within GFF850 at 560.890 kb on + strand, within GFF850 at 560.891 kb on - strand, within GFF850 at 560.897 kb on - strand, within GFF850 at 560.897 kb on - strand, within GFF850 at 560.919 kb on + strand, within GFF850 at 560.919 kb on + strand, within GFF850 at 560.938 kb on + strand, within GFF850 at 560.938 kb on + strand, within GFF850 at 560.939 kb on - strand, within GFF850 at 560.939 kb on - strand, within GFF850 at 560.942 kb on + strand, within GFF850 at 560.942 kb on + strand, within GFF850 at 560.942 kb on + strand, within GFF850 at 560.943 kb on - strand, within GFF850 at 560.943 kb on - strand, within GFF850 at 560.943 kb on - strand, within GFF850 at 560.943 kb on - strand, within GFF850 at 560.958 kb on + strand, within GFF850 at 560.958 kb on + strand, within GFF850 at 560.958 kb on + strand, within GFF850 at 560.961 kb on + strand, within GFF850 at 560.961 kb on + strand, within GFF850 at 560.961 kb on + strand, within GFF850 at 560.961 kb on + strand, within GFF850 at 560.961 kb on + strand, within GFF850 at 560.961 kb on + strand, within GFF850 at 560.962 kb on - strand, within GFF850 at 560.962 kb on - strand, within GFF850 at 560.962 kb on - strand, within GFF850 at 560.962 kb on - strand, within GFF850 at 560.962 kb on - strand, within GFF850 at 560.962 kb on - strand, within GFF850 at 560.962 kb on - strand, within GFF850 at 560.973 kb on + strand, within GFF850 at 561.048 kb on - strand, within GFF850 at 561.048 kb on - strand, within GFF850 at 561.089 kb on + strand, within GFF850 at 561.089 kb on + strand, within GFF850 at 561.089 kb on + strand, within GFF850 at 561.111 kb on + strand, within GFF850 at 561.111 kb on + strand, within GFF850 at 561.111 kb on + strand, within GFF850 at 561.111 kb on + strand, within GFF850 at 561.111 kb on + strand, within GFF850 at 561.112 kb on - strand, within GFF850 at 561.167 kb on + strand, within GFF850 at 561.168 kb on - strand, within GFF850 at 561.314 kb on - strand, within GFF850 at 561.389 kb on - strand, within GFF850 at 561.463 kb on + strand, within GFF850 at 561.463 kb on + strand, within GFF850 at 561.464 kb on - strand, within GFF850 at 561.464 kb on - strand, within GFF850 at 561.464 kb on - strand, within GFF850 at 561.493 kb on - strand, within GFF850 at 561.493 kb on - strand, within GFF850 at 561.515 kb on + strand, within GFF850 at 561.515 kb on + strand, within GFF850 at 561.515 kb on + strand, within GFF850 at 561.516 kb on - strand, within GFF850 at 561.516 kb on - strand, within GFF850 at 561.516 kb on - strand, within GFF850 at 561.516 kb on - strand, within GFF850 at 561.535 kb on + strand, within GFF850 at 561.535 kb on + strand, within GFF850 at 561.535 kb on + strand, within GFF850 at 561.536 kb on - strand, within GFF850 at 561.536 kb on - strand, within GFF850 at 561.564 kb on + strand, within GFF850 at 561.564 kb on + strand, within GFF850 at 561.564 kb on + strand, within GFF850 at 561.564 kb on + strand, within GFF850 at 561.564 kb on + strand, within GFF850 at 561.564 kb on + strand, within GFF850 at 561.565 kb on - strand, within GFF850 at 561.565 kb on - strand, within GFF850 at 561.565 kb on - strand, within GFF850 at 561.565 kb on - strand, within GFF850 at 561.565 kb on - strand, within GFF850 at 561.716 kb on - strand, within GFF850 at 561.756 kb on + strand, within GFF850 at 561.756 kb on + strand, within GFF850 at 561.757 kb on - strand, within GFF850 at 561.757 kb on - strand, within GFF850 at 561.818 kb on + strand, within GFF850 at 561.818 kb on + strand, within GFF850 at 561.819 kb on - strand, within GFF850 at 561.842 kb on + strand, within GFF850 at 561.842 kb on + strand, within GFF850 at 561.843 kb on - strand, within GFF850 at 561.856 kb on + strand, within GFF850 at 561.864 kb on + strand, within GFF850 at 561.864 kb on + strand, within GFF850 at 561.864 kb on + strand, within GFF850 at 561.864 kb on + strand, within GFF850 at 561.864 kb on + strand, within GFF850 at 561.865 kb on - strand, within GFF850 at 561.865 kb on - strand, within GFF850 at 561.876 kb on - strand, within GFF850 at 561.951 kb on + strand at 561.951 kb on + strand at 561.951 kb on + strand at 561.951 kb on + strand at 561.952 kb on - strand at 561.952 kb on - strand at 562.055 kb on + strand at 562.055 kb on + strand at 562.055 kb on + strand at 562.055 kb on + strand at 562.055 kb on + strand at 562.056 kb on - strand at 562.056 kb on - strand at 562.096 kb on + strand at 562.097 kb on - strand at 562.105 kb on - strand at 562.124 kb on + strand at 562.124 kb on + strand at 562.135 kb on + strand at 562.136 kb on - strand at 562.139 kb on + strand at 562.139 kb on + strand at 562.139 kb on + strand at 562.140 kb on - strand at 562.140 kb on - strand at 562.222 kb on - strand at 562.222 kb on - strand at 562.241 kb on + strand at 562.362 kb on - strand at 562.371 kb on + strand at 562.372 kb on - strand at 562.452 kb on + strand at 562.453 kb on - strand at 562.482 kb on - strand at 562.534 kb on + strand at 562.534 kb on + strand at 562.534 kb on + strand at 562.534 kb on + strand at 562.535 kb on - strand at 562.535 kb on - strand at 562.535 kb on - strand at 562.535 kb on - strand at 562.535 kb on - strand at 562.535 kb on - strand at 562.587 kb on + strand at 562.587 kb on + strand at 562.587 kb on + strand at 562.587 kb on + strand at 562.587 kb on + strand at 562.587 kb on + strand at 562.587 kb on + strand at 562.588 kb on - strand at 562.588 kb on - strand at 562.588 kb on - strand at 562.725 kb on + strand at 562.725 kb on + strand at 562.726 kb on - strand at 562.726 kb on - strand at 562.749 kb on - strand at 562.859 kb on + strand at 562.859 kb on + strand at 562.872 kb on + strand at 562.873 kb on - strand at 562.873 kb on - strand at 562.873 kb on - strand at 562.873 kb on - strand at 562.879 kb on + strand at 562.879 kb on + strand at 562.879 kb on + strand at 562.879 kb on + strand at 562.879 kb on + strand at 562.879 kb on + strand at 562.880 kb on - strand at 562.880 kb on - strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.944 kb on + strand at 562.944 kb on + strand at 562.944 kb on + strand at 562.944 kb on + strand at 562.944 kb on + strand at 562.945 kb on - strand at 562.945 kb on - strand at 562.945 kb on - strand at 562.945 kb on - strand at 562.967 kb on + strand at 562.967 kb on + strand at 562.967 kb on + strand at 562.967 kb on + strand at 562.968 kb on - strand at 563.048 kb on + strand at 563.048 kb on + strand at 563.048 kb on + strand at 563.048 kb on + strand at 563.048 kb on + strand at 563.048 kb on + strand at 563.048 kb on - strand at 563.049 kb on - strand at 563.049 kb on - strand at 563.049 kb on - strand at 563.049 kb on - strand at 563.049 kb on - strand at 563.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 559,423 - +0.6 559,482 + -0.1 559,482 + +0.6 559,483 - -0.1 559,500 + -0.3 559,500 + -0.2 559,501 - -0.9 559,787 - -1.2 559,833 + +0.1 559,833 + +0.1 559,834 - +0.2 559,834 - -0.1 559,834 - -0.8 559,861 + -0.1 559,861 + +0.1 559,861 + -0.8 559,861 + +0.3 559,861 + +0.5 559,862 - -0.1 559,862 - +1.4 559,862 - -0.2 559,862 - -0.1 559,865 + +0.6 559,865 + +0.2 559,865 + +0.4 559,866 - -0.1 559,866 - -0.1 559,866 - -0.4 560,051 + -0.9 560,051 + -0.2 560,051 + -0.0 560,052 - +0.1 560,057 - -0.4 560,103 + +0.8 560,103 + +0.2 560,104 - -0.4 560,104 - -0.7 560,104 - -0.2 560,119 + +0.1 560,119 + +0.6 560,120 - -0.7 560,120 - +0.4 560,120 - -0.1 560,263 + +0.8 560,263 + -0.2 560,264 - +0.1 560,264 - +0.2 560,286 + -0.6 560,287 - +0.3 560,343 + +1.1 560,343 + +0.1 560,343 + +0.5 560,344 - +0.3 560,344 - +0.2 560,344 - -0.2 560,347 + +0.6 560,348 - -0.3 560,348 - +1.1 560,420 + -0.8 560,457 - +0.1 560,514 + GFF850 0.10 +0.5 560,514 + GFF850 0.10 -0.0 560,515 - GFF850 0.10 +1.1 560,515 - GFF850 0.10 -0.5 560,559 + GFF850 0.13 -0.2 560,559 + GFF850 0.13 +0.3 560,559 + GFF850 0.13 +0.6 560,560 + GFF850 0.13 +0.0 560,560 - GFF850 0.13 -0.1 560,560 - GFF850 0.13 -0.1 560,560 - GFF850 0.13 +0.1 560,560 - GFF850 0.13 -1.0 560,613 + GFF850 0.16 +0.1 560,613 + GFF850 0.16 +0.5 560,614 - GFF850 0.16 -0.4 560,631 + GFF850 0.17 +0.3 560,631 + GFF850 0.17 +0.1 560,632 - GFF850 0.17 +0.1 560,642 + GFF850 0.18 +0.4 560,642 + GFF850 0.18 +0.4 560,649 + GFF850 0.18 +0.1 560,749 - GFF850 0.24 -0.9 560,801 + GFF850 0.26 -0.5 560,801 + GFF850 0.26 -0.2 560,802 - GFF850 0.27 +0.4 560,802 - GFF850 0.27 -0.8 560,845 - GFF850 0.29 +0.1 560,845 - GFF850 0.29 -0.1 560,890 + GFF850 0.31 -0.1 560,891 - GFF850 0.32 -0.6 560,897 - GFF850 0.32 +1.4 560,897 - GFF850 0.32 +0.3 560,919 + GFF850 0.33 +0.3 560,919 + GFF850 0.33 +0.6 560,938 + GFF850 0.34 +0.8 560,938 + GFF850 0.34 +0.6 560,939 - GFF850 0.34 -0.2 560,939 - GFF850 0.34 +0.1 560,942 + GFF850 0.34 -0.3 560,942 + GFF850 0.34 +1.6 560,942 + GFF850 0.34 +2.4 560,943 - GFF850 0.34 +0.1 560,943 - GFF850 0.34 -0.8 560,943 - GFF850 0.34 +0.1 560,943 - GFF850 0.34 -0.4 560,958 + GFF850 0.35 -0.1 560,958 + GFF850 0.35 -0.1 560,958 + GFF850 0.35 -0.9 560,961 + GFF850 0.35 +0.0 560,961 + GFF850 0.35 +1.1 560,961 + GFF850 0.35 +1.1 560,961 + GFF850 0.35 -0.4 560,961 + GFF850 0.35 +0.2 560,961 + GFF850 0.35 +0.3 560,962 - GFF850 0.36 +0.8 560,962 - GFF850 0.36 -1.4 560,962 - GFF850 0.36 +0.1 560,962 - GFF850 0.36 +0.6 560,962 - GFF850 0.36 +0.1 560,962 - GFF850 0.36 +0.3 560,962 - GFF850 0.36 +0.1 560,973 + GFF850 0.36 +0.3 561,048 - GFF850 0.40 -0.4 561,048 - GFF850 0.40 -0.8 561,089 + GFF850 0.43 -0.3 561,089 + GFF850 0.43 +0.3 561,089 + GFF850 0.43 -0.3 561,111 + GFF850 0.44 -0.2 561,111 + GFF850 0.44 -0.3 561,111 + GFF850 0.44 +0.1 561,111 + GFF850 0.44 +0.2 561,111 + GFF850 0.44 -0.6 561,112 - GFF850 0.44 -0.5 561,167 + GFF850 0.47 -0.4 561,168 - GFF850 0.47 +0.0 561,314 - GFF850 0.55 +0.5 561,389 - GFF850 0.60 +2.4 561,463 + GFF850 0.64 +0.1 561,463 + GFF850 0.64 -0.3 561,464 - GFF850 0.64 -1.5 561,464 - GFF850 0.64 -0.1 561,464 - GFF850 0.64 +0.4 561,493 - GFF850 0.65 -0.6 561,493 - GFF850 0.65 +0.8 561,515 + GFF850 0.67 -0.8 561,515 + GFF850 0.67 -1.8 561,515 + GFF850 0.67 +0.3 561,516 - GFF850 0.67 +0.9 561,516 - GFF850 0.67 +0.3 561,516 - GFF850 0.67 -1.5 561,516 - GFF850 0.67 +1.1 561,535 + GFF850 0.68 -0.0 561,535 + GFF850 0.68 +0.2 561,535 + GFF850 0.68 +1.5 561,536 - GFF850 0.68 +0.4 561,536 - GFF850 0.68 -0.5 561,564 + GFF850 0.69 +0.2 561,564 + GFF850 0.69 +0.4 561,564 + GFF850 0.69 +0.1 561,564 + GFF850 0.69 -2.3 561,564 + GFF850 0.69 +0.2 561,564 + GFF850 0.69 +0.3 561,565 - GFF850 0.69 -0.3 561,565 - GFF850 0.69 +0.3 561,565 - GFF850 0.69 -0.1 561,565 - GFF850 0.69 -0.2 561,565 - GFF850 0.69 +0.3 561,716 - GFF850 0.78 +0.6 561,756 + GFF850 0.80 -0.2 561,756 + GFF850 0.80 -1.7 561,757 - GFF850 0.80 -0.2 561,757 - GFF850 0.80 -0.0 561,818 + GFF850 0.84 -0.1 561,818 + GFF850 0.84 +0.2 561,819 - GFF850 0.84 -0.3 561,842 + GFF850 0.85 +1.2 561,842 + GFF850 0.85 +0.1 561,843 - GFF850 0.85 +0.2 561,856 + GFF850 0.86 -0.6 561,864 + GFF850 0.86 -0.5 561,864 + GFF850 0.86 -0.2 561,864 + GFF850 0.86 -0.4 561,864 + GFF850 0.86 +1.3 561,864 + GFF850 0.86 +0.1 561,865 - GFF850 0.86 +0.5 561,865 - GFF850 0.86 -0.0 561,876 - GFF850 0.87 +0.8 561,951 + +0.2 561,951 + +0.1 561,951 + -0.1 561,951 + -1.1 561,952 - -0.1 561,952 - -0.4 562,055 + -0.6 562,055 + +1.1 562,055 + +0.1 562,055 + +1.0 562,055 + -0.9 562,056 - +0.1 562,056 - +0.1 562,096 + +0.8 562,097 - -0.9 562,105 - -0.2 562,124 + -0.4 562,124 + -0.2 562,135 + -0.2 562,136 - -0.0 562,139 + -0.4 562,139 + +0.6 562,139 + -0.5 562,140 - -0.0 562,140 - +0.0 562,222 - +0.3 562,222 - +0.2 562,241 + -0.5 562,362 - -0.6 562,371 + -0.4 562,372 - -0.2 562,452 + +0.6 562,453 - -0.1 562,482 - -0.2 562,534 + -0.2 562,534 + -0.8 562,534 + +0.5 562,534 + +1.2 562,535 - -0.0 562,535 - +1.3 562,535 - -0.1 562,535 - +0.3 562,535 - -1.0 562,535 - +0.1 562,587 + +0.4 562,587 + +0.1 562,587 + +0.5 562,587 + -1.2 562,587 + +0.3 562,587 + -0.8 562,587 + +1.6 562,588 - +1.2 562,588 - -1.4 562,588 - +0.2 562,725 + +0.2 562,725 + -0.1 562,726 - -0.2 562,726 - -0.0 562,749 - -0.1 562,859 + -0.1 562,859 + -0.2 562,872 + +0.1 562,873 - -0.3 562,873 - +0.5 562,873 - +0.0 562,873 - +0.1 562,879 + +0.1 562,879 + -0.7 562,879 + +0.2 562,879 + -0.2 562,879 + -1.1 562,879 + -1.0 562,880 - -0.8 562,880 - +0.2 562,897 + -0.8 562,897 + -0.2 562,944 + -0.1 562,944 + +0.5 562,944 + -0.4 562,944 + -0.7 562,944 + +0.3 562,945 - -0.5 562,945 - -0.2 562,945 - -1.4 562,945 - -0.1 562,967 + +0.1 562,967 + -0.4 562,967 + +1.2 562,967 + -0.3 562,968 - +0.3 563,048 + -0.3 563,048 + -0.1 563,048 + +0.7 563,048 + -0.2 563,048 + -0.7 563,048 + -0.1 563,048 - +0.1 563,049 - -0.1 563,049 - +1.1 563,049 - +0.2 563,049 - -1.4 563,049 - -2.2 563,089 + +0.6
Or see this region's nucleotide sequence