Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF816

Experiment: Ying_Others16 rep A; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF815 and GFF816 are separated by 18 nucleotidesGFF816 and GFF817 are separated by 20 nucleotidesGFF817 and GFF818 are separated by 36 nucleotides GFF815 - FIG015547: peptidase, M16 family, at 509,460 to 510,911 GFF815 GFF816 - FIG015287: Zinc protease, at 510,930 to 512,267 GFF816 GFF817 - Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-), at 512,288 to 512,902 GFF817 GFF818 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 512,939 to 513,457 GFF818 Position (kb) 510 511 512 513Strain fitness (log2 ratio) -2 -1 0 1at 510.012 kb on + strand, within GFF815at 510.012 kb on + strand, within GFF815at 510.012 kb on + strand, within GFF815at 510.108 kb on + strand, within GFF815at 510.108 kb on + strand, within GFF815at 510.108 kb on + strand, within GFF815at 510.108 kb on + strand, within GFF815at 510.109 kb on - strand, within GFF815at 510.109 kb on - strand, within GFF815at 510.109 kb on - strand, within GFF815at 510.109 kb on - strand, within GFF815at 510.109 kb on - strand, within GFF815at 510.109 kb on - strand, within GFF815at 510.306 kb on + strand, within GFF815at 510.307 kb on - strand, within GFF815at 510.400 kb on - strand, within GFF815at 510.483 kb on + strand, within GFF815at 510.484 kb on - strand, within GFF815at 510.660 kb on + strand, within GFF815at 510.661 kb on - strand, within GFF815at 510.661 kb on - strand, within GFF815at 510.661 kb on - strand, within GFF815at 510.661 kb on - strand, within GFF815at 510.705 kb on + strand, within GFF815at 510.802 kb on - strandat 510.802 kb on - strandat 511.473 kb on + strand, within GFF816at 511.473 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.495 kb on - strand, within GFF816at 511.552 kb on - strand, within GFF816at 511.552 kb on - strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.887 kb on + strand, within GFF816at 511.887 kb on + strand, within GFF816at 511.888 kb on - strand, within GFF816at 511.888 kb on - strand, within GFF816at 511.902 kb on + strand, within GFF816at 511.903 kb on - strand, within GFF816at 512.056 kb on - strand, within GFF816at 512.148 kb on + strandat 512.275 kb on + strandat 512.275 kb on + strandat 512.276 kb on - strandat 512.276 kb on - strandat 512.682 kb on + strand, within GFF817at 512.683 kb on - strand, within GFF817at 512.683 kb on - strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.727 kb on - strand, within GFF817at 512.780 kb on + strand, within GFF817at 512.781 kb on - strand, within GFF817at 512.928 kb on + strandat 512.928 kb on + strandat 512.928 kb on + strandat 512.933 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
remove
510,012 + GFF815 0.38 +0.6
510,012 + GFF815 0.38 +0.6
510,012 + GFF815 0.38 -0.5
510,108 + GFF815 0.45 +0.3
510,108 + GFF815 0.45 -0.4
510,108 + GFF815 0.45 -0.4
510,108 + GFF815 0.45 +0.2
510,109 - GFF815 0.45 -0.1
510,109 - GFF815 0.45 +0.5
510,109 - GFF815 0.45 +0.6
510,109 - GFF815 0.45 +1.4
510,109 - GFF815 0.45 -0.1
510,109 - GFF815 0.45 +0.2
510,306 + GFF815 0.58 -0.1
510,307 - GFF815 0.58 +0.2
510,400 - GFF815 0.65 +0.1
510,483 + GFF815 0.70 -0.8
510,484 - GFF815 0.71 -0.1
510,660 + GFF815 0.83 +0.5
510,661 - GFF815 0.83 -0.0
510,661 - GFF815 0.83 -0.4
510,661 - GFF815 0.83 -0.2
510,661 - GFF815 0.83 +0.1
510,705 + GFF815 0.86 -0.3
510,802 - -0.1
510,802 - -0.7
511,473 + GFF816 0.41 +0.3
511,473 + GFF816 0.41 +0.3
511,488 + GFF816 0.42 -0.2
511,488 + GFF816 0.42 +1.1
511,488 + GFF816 0.42 -0.5
511,489 - GFF816 0.42 +0.5
511,489 - GFF816 0.42 -2.3
511,489 - GFF816 0.42 -0.1
511,495 - GFF816 0.42 +0.8
511,552 - GFF816 0.46 -0.7
511,552 - GFF816 0.46 -1.2
511,806 + GFF816 0.65 -0.2
511,806 + GFF816 0.65 +0.8
511,806 + GFF816 0.65 -0.5
511,818 + GFF816 0.66 +0.0
511,818 + GFF816 0.66 -0.4
511,818 + GFF816 0.66 +0.7
511,818 + GFF816 0.66 +0.9
511,818 + GFF816 0.66 +0.5
511,818 + GFF816 0.66 +0.2
511,818 + GFF816 0.66 +0.2
511,819 - GFF816 0.66 +0.1
511,819 - GFF816 0.66 -0.4
511,819 - GFF816 0.66 -0.4
511,819 - GFF816 0.66 +0.5
511,819 - GFF816 0.66 -0.1
511,819 - GFF816 0.66 -0.3
511,887 + GFF816 0.72 -0.7
511,887 + GFF816 0.72 +1.3
511,888 - GFF816 0.72 +0.1
511,888 - GFF816 0.72 +0.5
511,902 + GFF816 0.73 +0.4
511,903 - GFF816 0.73 +0.5
512,056 - GFF816 0.84 -0.3
512,148 + -0.0
512,275 + -1.3
512,275 + +0.8
512,276 - -0.5
512,276 - -0.6
512,682 + GFF817 0.64 -0.1
512,683 - GFF817 0.64 -0.9
512,683 - GFF817 0.64 -0.3
512,726 + GFF817 0.71 -0.7
512,726 + GFF817 0.71 +0.0
512,726 + GFF817 0.71 -0.2
512,727 - GFF817 0.71 -0.6
512,780 + GFF817 0.80 +0.1
512,781 - GFF817 0.80 +0.0
512,928 + -0.5
512,928 + +0.3
512,928 + -0.2
512,933 + -1.4

Or see this region's nucleotide sequence