Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF783 and GFF784 are separated by 200 nucleotides GFF784 and GFF785 are separated by 244 nucleotides
GFF783 - sensor histidine kinase, at 477,779 to 479,476
GFF783
GFF784 - RNA polymerase sigma factor RpoH, at 479,677 to 480,624
GFF784
GFF785 - Transcriptional regulator ligR, LysR family, at 480,869 to 481,795
GFF785
Position (kb) 479
480
481 Strain fitness (log2 ratio) -2
-1
0
1 at 478.833 kb on + strand, within GFF783 at 478.834 kb on - strand, within GFF783 at 478.843 kb on - strand, within GFF783 at 478.843 kb on - strand, within GFF783 at 478.843 kb on - strand, within GFF783 at 478.921 kb on - strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.032 kb on - strand, within GFF783 at 479.032 kb on - strand, within GFF783 at 479.032 kb on - strand, within GFF783 at 479.032 kb on - strand, within GFF783 at 479.161 kb on - strand, within GFF783 at 479.367 kb on + strand at 479.367 kb on + strand at 479.368 kb on - strand at 479.368 kb on - strand at 479.368 kb on - strand at 479.368 kb on - strand at 479.684 kb on + strand at 479.684 kb on + strand at 479.684 kb on + strand at 479.684 kb on + strand at 480.550 kb on + strand at 480.610 kb on + strand at 480.610 kb on + strand at 480.610 kb on + strand at 480.611 kb on - strand at 480.611 kb on - strand at 480.611 kb on - strand at 480.657 kb on + strand at 480.657 kb on + strand at 480.657 kb on + strand at 480.657 kb on + strand at 480.657 kb on + strand at 480.658 kb on - strand at 480.667 kb on + strand at 480.668 kb on - strand at 480.680 kb on + strand at 480.828 kb on - strand at 480.890 kb on + strand at 480.891 kb on - strand at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.206 kb on - strand, within GFF785 at 481.217 kb on + strand, within GFF785 at 481.218 kb on - strand, within GFF785 at 481.265 kb on + strand, within GFF785 at 481.265 kb on + strand, within GFF785 at 481.265 kb on + strand, within GFF785
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 478,833 + GFF783 0.62 +0.2 478,834 - GFF783 0.62 -0.4 478,843 - GFF783 0.63 -0.2 478,843 - GFF783 0.63 -0.2 478,843 - GFF783 0.63 -0.2 478,921 - GFF783 0.67 +1.7 479,031 + GFF783 0.74 +1.7 479,031 + GFF783 0.74 -0.5 479,031 + GFF783 0.74 +1.7 479,031 + GFF783 0.74 +0.0 479,031 + GFF783 0.74 +0.0 479,032 - GFF783 0.74 -0.5 479,032 - GFF783 0.74 +0.1 479,032 - GFF783 0.74 +0.3 479,032 - GFF783 0.74 -0.1 479,161 - GFF783 0.81 -0.3 479,367 + +0.4 479,367 + -0.9 479,368 - +0.1 479,368 - -0.1 479,368 - -0.7 479,368 - -0.5 479,684 + -0.0 479,684 + +0.1 479,684 + -0.2 479,684 + +0.7 480,550 + +0.1 480,610 + -0.2 480,610 + +0.1 480,610 + -0.2 480,611 - +1.2 480,611 - -0.8 480,611 - -2.0 480,657 + +0.1 480,657 + -0.3 480,657 + -0.6 480,657 + -0.3 480,657 + +0.4 480,658 - -0.4 480,667 + -0.0 480,668 - +0.8 480,680 + -0.7 480,828 - +1.1 480,890 + -0.5 480,891 - +0.7 481,088 + GFF785 0.24 -0.3 481,088 + GFF785 0.24 -0.7 481,088 + GFF785 0.24 -0.1 481,088 + GFF785 0.24 -0.9 481,089 - GFF785 0.24 +0.3 481,089 - GFF785 0.24 +0.3 481,089 - GFF785 0.24 +0.7 481,206 - GFF785 0.36 -0.5 481,217 + GFF785 0.38 -0.1 481,218 - GFF785 0.38 +1.2 481,265 + GFF785 0.43 +0.5 481,265 + GFF785 0.43 -0.2 481,265 + GFF785 0.43 +0.1
Or see this region's nucleotide sequence