Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF765

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF764 and GFF765 are separated by 10 nucleotidesGFF765 and GFF766 are separated by 79 nucleotidesGFF766 and GFF767 are separated by 23 nucleotides GFF764 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 457,289 to 458,404 GFF764 GFF765 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 458,415 to 459,596 GFF765 GFF766 - Virulence factor mviM, at 459,676 to 460,407 GFF766 GFF767 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 460,431 to 461,015 GFF767 Position (kb) 458 459 460Strain fitness (log2 ratio) -1 0 1 2at 457.548 kb on + strand, within GFF764at 457.548 kb on + strand, within GFF764at 457.548 kb on + strand, within GFF764at 457.549 kb on - strand, within GFF764at 457.549 kb on - strand, within GFF764at 457.549 kb on - strand, within GFF764at 457.551 kb on + strand, within GFF764at 457.551 kb on + strand, within GFF764at 457.551 kb on + strand, within GFF764at 457.551 kb on + strand, within GFF764at 457.551 kb on + strand, within GFF764at 457.552 kb on - strand, within GFF764at 457.552 kb on - strand, within GFF764at 457.552 kb on - strand, within GFF764at 457.659 kb on + strand, within GFF764at 457.659 kb on + strand, within GFF764at 457.660 kb on - strand, within GFF764at 458.241 kb on + strand, within GFF764at 458.241 kb on + strand, within GFF764at 458.242 kb on - strand, within GFF764at 458.242 kb on - strand, within GFF764at 458.242 kb on - strand, within GFF764at 458.335 kb on - strandat 458.470 kb on + strandat 458.470 kb on + strandat 458.471 kb on - strandat 458.471 kb on - strandat 458.623 kb on + strand, within GFF765at 458.623 kb on + strand, within GFF765at 458.624 kb on - strand, within GFF765at 458.890 kb on + strand, within GFF765at 459.104 kb on - strand, within GFF765at 459.145 kb on + strand, within GFF765at 459.145 kb on + strand, within GFF765at 459.145 kb on + strand, within GFF765at 459.145 kb on + strand, within GFF765at 459.146 kb on - strand, within GFF765at 459.146 kb on - strand, within GFF765at 459.146 kb on - strand, within GFF765at 459.146 kb on - strand, within GFF765at 459.214 kb on + strand, within GFF765at 459.998 kb on + strand, within GFF766at 459.999 kb on - strand, within GFF766at 459.999 kb on - strand, within GFF766at 460.118 kb on + strand, within GFF766at 460.274 kb on + strand, within GFF766at 460.275 kb on - strand, within GFF766at 460.275 kb on - strand, within GFF766at 460.275 kb on - strand, within GFF766at 460.275 kb on - strand, within GFF766at 460.408 kb on + strandat 460.408 kb on + strandat 460.408 kb on + strandat 460.408 kb on + strandat 460.408 kb on + strandat 460.409 kb on - strandat 460.409 kb on - strandat 460.409 kb on - strandat 460.409 kb on - strandat 460.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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457,548 + GFF764 0.23 -0.1
457,548 + GFF764 0.23 -1.4
457,548 + GFF764 0.23 +0.4
457,549 - GFF764 0.23 +0.1
457,549 - GFF764 0.23 +0.4
457,549 - GFF764 0.23 -0.3
457,551 + GFF764 0.23 -0.2
457,551 + GFF764 0.23 +0.4
457,551 + GFF764 0.23 -0.6
457,551 + GFF764 0.23 +0.7
457,551 + GFF764 0.23 -0.3
457,552 - GFF764 0.24 -0.2
457,552 - GFF764 0.24 +0.1
457,552 - GFF764 0.24 -0.1
457,659 + GFF764 0.33 +1.1
457,659 + GFF764 0.33 -0.1
457,660 - GFF764 0.33 -0.1
458,241 + GFF764 0.85 +0.5
458,241 + GFF764 0.85 -1.0
458,242 - GFF764 0.85 +0.6
458,242 - GFF764 0.85 -0.3
458,242 - GFF764 0.85 +0.8
458,335 - -0.3
458,470 + -0.7
458,470 + +0.2
458,471 - -0.3
458,471 - -0.4
458,623 + GFF765 0.18 +0.6
458,623 + GFF765 0.18 +0.0
458,624 - GFF765 0.18 -0.2
458,890 + GFF765 0.40 +2.0
459,104 - GFF765 0.58 -0.1
459,145 + GFF765 0.62 +0.6
459,145 + GFF765 0.62 +0.3
459,145 + GFF765 0.62 +0.2
459,145 + GFF765 0.62 +0.4
459,146 - GFF765 0.62 +0.8
459,146 - GFF765 0.62 +0.3
459,146 - GFF765 0.62 +0.6
459,146 - GFF765 0.62 -1.4
459,214 + GFF765 0.68 -0.0
459,998 + GFF766 0.44 +0.1
459,999 - GFF766 0.44 +0.6
459,999 - GFF766 0.44 +1.2
460,118 + GFF766 0.60 +0.0
460,274 + GFF766 0.82 -0.1
460,275 - GFF766 0.82 +0.1
460,275 - GFF766 0.82 -1.0
460,275 - GFF766 0.82 -0.4
460,275 - GFF766 0.82 +0.2
460,408 + -0.3
460,408 + -0.3
460,408 + +0.6
460,408 + +0.1
460,408 + +0.5
460,409 - +0.1
460,409 - -0.9
460,409 - +0.1
460,409 - -0.7
460,409 - +0.5

Or see this region's nucleotide sequence