Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5724

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
2,752,897	+		GFF5722	0.86	-0.0
2,752,897	+		GFF5722	0.86	-0.0
2,752,898	-		GFF5722	0.86	-0.2
2,752,898	-		GFF5722	0.86	-0.0
2,752,898	-		GFF5722	0.86	+0.3
2,752,898	-		GFF5722	0.86	+0.6
2,752,898	-		GFF5722	0.86	+0.0
2,753,103	+				-0.0
2,753,104	-				-1.0
2,753,111	+				-0.6
2,753,111	+				-0.1
2,753,111	+				-0.6
2,753,111	+				-0.0
2,753,112	-				+0.1
2,753,112	-				+1.0
2,753,112	-				+0.4
2,753,146	+				+0.6
2,753,146	+				+0.1
2,753,169	+				-0.7
2,753,341	-		GFF5723	0.26	+1.4
2,753,341	-		GFF5723	0.26	+1.0
2,753,341	-		GFF5723	0.26	+0.0
2,753,341	-		GFF5723	0.26	-0.6
2,753,565	+		GFF5723	0.58	+0.1
2,753,566	-		GFF5723	0.58	-0.1
2,753,566	-		GFF5723	0.58	-0.6
2,753,604	+		GFF5723	0.64	+0.2
2,753,604	+		GFF5723	0.64	-0.2
2,753,604	+		GFF5723	0.64	+1.1
2,753,733	+		GFF5723	0.82	+0.6
2,753,733	+		GFF5723	0.82	+0.3
2,753,733	+		GFF5723	0.82	+0.1
2,753,734	-		GFF5723	0.82	+1.0
2,753,734	-		GFF5723	0.82	+0.1
2,753,754	+		GFF5723	0.85	-0.7
2,753,876	+				-0.2
2,753,876	+				-0.1
2,754,071	+		GFF5724	0.33	-0.2
2,754,071	+		GFF5724	0.33	-0.6
2,754,072	-		GFF5724	0.33	+0.2
2,754,072	-		GFF5724	0.33	+0.3
2,754,140	+		GFF5724	0.43	+0.3
2,754,140	+		GFF5724	0.43	+0.1
2,754,140	+		GFF5724	0.43	-0.2
2,754,140	+		GFF5724	0.43	-0.1
2,754,141	-		GFF5724	0.43	+0.1
2,754,141	-		GFF5724	0.43	-0.2
2,754,152	+		GFF5724	0.45	-0.8
2,754,152	+		GFF5724	0.45	-0.3
2,754,413	+		GFF5724	0.83	-0.2
2,754,414	-		GFF5724	0.84	+1.0
2,754,414	-		GFF5724	0.84	+0.9
2,754,414	-		GFF5724	0.84	-0.2
2,754,434	+		GFF5724	0.87	+0.3
2,754,434	+		GFF5724	0.87	-0.5
2,754,435	-		GFF5724	0.87	-0.2
2,754,802	+		GFF5725	0.36	+0.3
2,754,802	+		GFF5725	0.36	-0.8
2,755,168	+		GFF5725	0.86	-0.1
2,755,168	+		GFF5725	0.86	-0.9
2,755,168	+		GFF5725	0.86	-0.2
2,755,168	+		GFF5725	0.86	-2.1
2,755,168	+		GFF5725	0.86	+0.1
2,755,168	+		GFF5725	0.86	+0.3
2,755,168	+		GFF5725	0.86	-0.3
2,755,169	-		GFF5725	0.87	+0.1
2,755,169	-		GFF5725	0.87	+0.4
2,755,169	-		GFF5725	0.87	-0.7
2,755,169	-		GFF5725	0.87	-0.1
2,755,169	-		GFF5725	0.87	+1.2