Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5343

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
2,343,530	+		GFF5343	0.33	-2.4
2,343,530	+		GFF5343	0.33	-3.3
2,343,530	+		GFF5343	0.33	-2.7
2,343,531	-		GFF5343	0.33	-4.0
2,343,531	-		GFF5343	0.33	-2.9
2,343,944	+		GFF5343	0.70	-3.8
2,343,944	+		GFF5343	0.70	-2.4
2,343,945	-		GFF5343	0.71	-2.6
2,343,945	-		GFF5343	0.71	-3.1
2,343,945	-		GFF5343	0.71	-2.5
2,344,145	+		GFF5343	0.89	-2.0
2,344,145	+		GFF5343	0.89	+0.0
2,344,146	-		GFF5343	0.89	-3.2
2,344,148	+		GFF5343	0.89	-2.2
2,344,148	+		GFF5343	0.89	-0.7
2,344,148	+		GFF5343	0.89	-4.1
2,344,148	+		GFF5343	0.89	-3.6
2,344,148	+		GFF5343	0.89	-3.6
2,344,149	-		GFF5343	0.89	-3.1
2,344,149	-		GFF5343	0.89	-2.1
2,344,149	-		GFF5343	0.89	-2.9
2,344,149	-		GFF5343	0.89	-2.5
2,344,149	-		GFF5343	0.89	-3.0
2,344,149	-		GFF5343	0.89	-2.4
2,344,149	-		GFF5343	0.89	-3.1
2,344,149	-		GFF5343	0.89	-3.4
2,344,154	+		GFF5343	0.90	-3.3
2,344,154	+		GFF5343	0.90	-3.7
2,344,155	-		GFF5343	0.90	-3.9
2,344,232	+				-2.5
2,344,232	+				-3.2
2,344,233	-				-3.3
2,344,233	-				-2.3
2,344,233	-				-4.9
2,344,250	+				-3.4
2,344,681	+		GFF5344	0.47	-2.2
2,344,681	+		GFF5344	0.47	-1.4
2,344,681	+		GFF5344	0.47	-1.3
2,344,682	-		GFF5344	0.47	-0.6
2,344,682	-		GFF5344	0.47	-3.9
2,344,813	+		GFF5344	0.62	-2.6
2,344,813	+		GFF5344	0.62	-3.0
2,344,813	+		GFF5344	0.62	-3.4
2,344,813	+		GFF5344	0.62	-1.3
2,344,814	-		GFF5344	0.62	-3.7
2,344,814	-		GFF5344	0.62	-3.1
2,344,814	-		GFF5344	0.62	-1.9
2,344,814	-		GFF5344	0.62	-1.9