Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5097

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
2,112,709	+				+0.7
2,112,709	+				-0.2
2,112,709	+				-1.2
2,112,730	+		GFF5096	0.11	-1.1
2,112,730	+		GFF5096	0.11	-0.3
2,112,730	+		GFF5096	0.11	-0.2
2,112,731	-		GFF5096	0.11	-0.5
2,112,731	-		GFF5096	0.11	-0.5
2,112,763	+		GFF5096	0.14	-0.4
2,112,764	-		GFF5096	0.15	-0.0
2,112,764	-		GFF5096	0.15	-0.5
2,112,764	-		GFF5096	0.15	+0.9
2,113,090	+		GFF5096	0.47	-1.0
2,113,090	+		GFF5096	0.47	-0.6
2,113,090	+		GFF5096	0.47	-0.0
2,113,091	-		GFF5096	0.47	-0.4
2,113,091	-		GFF5096	0.47	+1.0
2,113,108	+		GFF5096	0.49	+0.4
2,113,108	+		GFF5096	0.49	-0.0
2,113,108	+		GFF5096	0.49	-0.1
2,113,109	-		GFF5096	0.49	-0.3
2,113,109	-		GFF5096	0.49	-0.3
2,113,165	+		GFF5096	0.55	+0.2
2,113,166	-		GFF5096	0.55	-0.0
2,113,171	+		GFF5096	0.55	-0.3
2,113,402	+		GFF5096	0.78	+0.3
2,113,417	+		GFF5096	0.80	-0.9
2,113,417	+		GFF5096	0.80	-0.2
2,113,417	+		GFF5096	0.80	-0.5
2,113,417	+		GFF5096	0.80	-0.1
2,113,489	+		GFF5096	0.87	-0.4
2,113,489	+		GFF5096	0.87	-0.3
2,113,489	+		GFF5096	0.87	-0.9
2,113,490	-		GFF5096	0.87	-0.2
2,113,490	-		GFF5096	0.87	-0.1
2,113,490	-		GFF5096	0.87	-0.5
2,113,490	-		GFF5096	0.87	-0.1
2,113,535	-				-0.3
2,113,600	+				-0.2
2,113,600	+				-0.3
2,113,600	+				-0.6
2,113,600	+				-0.5
2,113,601	-				-0.5
2,113,601	-				-0.5
2,113,615	+				+0.4
2,113,615	+				+0.8
2,113,615	+				-0.3
2,113,615	+				-0.1
2,113,615	+				-0.2
2,113,616	-				-0.4
2,113,751	-		GFF5097	0.15	+0.4
2,113,861	+		GFF5097	0.27	-0.5
2,113,861	+		GFF5097	0.27	-0.1
2,113,861	+		GFF5097	0.27	-0.7
2,113,861	+		GFF5097	0.27	-0.4
2,113,862	-		GFF5097	0.27	+0.1
2,114,066	-		GFF5097	0.49	-1.3
2,114,401	+		GFF5097	0.86	-0.0
2,114,401	+		GFF5097	0.86	+0.4
2,114,402	-		GFF5097	0.87	-1.9
2,114,402	-		GFF5097	0.87	-0.3
2,114,402	-		GFF5097	0.87	+0.3
2,114,402	-		GFF5097	0.87	-0.1
2,114,407	+		GFF5097	0.87	-0.7
2,114,407	+		GFF5097	0.87	-0.5
2,114,583	+				-0.5
2,114,583	+				-0.1
2,114,886	+		GFF5098	0.40	-0.9
2,114,886	+		GFF5098	0.40	-0.3
2,114,886	+		GFF5098	0.40	+0.3
2,114,887	-		GFF5098	0.40	-1.1
2,114,887	-		GFF5098	0.40	-0.4
2,114,887	-		GFF5098	0.40	-0.2
2,115,138	+		GFF5098	0.67	-0.2
2,115,138	+		GFF5098	0.67	-1.1
2,115,252	+		GFF5098	0.80	-0.4
2,115,252	+		GFF5098	0.80	-0.4
2,115,252	+		GFF5098	0.80	-0.1
2,115,253	-		GFF5098	0.80	-0.3
2,115,253	-		GFF5098	0.80	+0.4
2,115,261	+		GFF5098	0.81	-0.7
2,115,261	+		GFF5098	0.81	-0.4
2,115,262	-		GFF5098	0.81	-0.4