Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4828

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4826 and GFF4827 are separated by 3 nucleotidesGFF4827 and GFF4828 are separated by 137 nucleotidesGFF4828 and GFF4829 are separated by 8 nucleotidesGFF4829 and GFF4830 are separated by 53 nucleotides GFF4826 - Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 1,837,094 to 1,839,247 GFF4826 GFF4827 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,839,251 to 1,839,994 GFF4827 GFF4828 - Sensor histidine kinase, at 1,840,132 to 1,841,754 GFF4828 GFF4829 - Two-component response regulator, at 1,841,763 to 1,842,155 GFF4829 GFF4830 - Histone acetyltransferase HPA2 and related acetyltransferases, at 1,842,209 to 1,843,138 GFF4830 Position (kb) 1840 1841 1842Strain fitness (log2 ratio) -2 -1 0 1at 1839.242 kb on + strandat 1839.713 kb on + strand, within GFF4827at 1839.713 kb on + strand, within GFF4827at 1839.917 kb on + strand, within GFF4827at 1839.918 kb on - strand, within GFF4827at 1839.947 kb on + strandat 1839.948 kb on - strandat 1839.948 kb on - strandat 1839.948 kb on - strandat 1840.472 kb on - strand, within GFF4828at 1840.717 kb on + strand, within GFF4828at 1840.739 kb on - strand, within GFF4828at 1840.759 kb on + strand, within GFF4828at 1840.760 kb on - strand, within GFF4828at 1840.760 kb on - strand, within GFF4828at 1840.768 kb on + strand, within GFF4828at 1840.768 kb on + strand, within GFF4828at 1840.768 kb on + strand, within GFF4828at 1840.769 kb on - strand, within GFF4828at 1840.834 kb on + strand, within GFF4828at 1840.834 kb on + strand, within GFF4828at 1840.834 kb on + strand, within GFF4828at 1840.834 kb on + strand, within GFF4828at 1840.835 kb on - strand, within GFF4828at 1840.835 kb on - strand, within GFF4828at 1840.835 kb on - strand, within GFF4828at 1840.835 kb on - strand, within GFF4828at 1840.891 kb on + strand, within GFF4828at 1840.892 kb on - strand, within GFF4828at 1840.892 kb on - strand, within GFF4828at 1841.197 kb on + strand, within GFF4828at 1841.198 kb on - strand, within GFF4828at 1841.260 kb on + strand, within GFF4828at 1841.260 kb on + strand, within GFF4828at 1841.261 kb on - strand, within GFF4828at 1841.261 kb on - strand, within GFF4828at 1841.261 kb on - strand, within GFF4828at 1841.261 kb on - strand, within GFF4828at 1841.261 kb on - strand, within GFF4828at 1841.818 kb on - strand, within GFF4829at 1842.188 kb on - strandat 1842.266 kb on + strandat 1842.266 kb on + strandat 1842.266 kb on + strandat 1842.266 kb on + strandat 1842.267 kb on - strandat 1842.338 kb on + strand, within GFF4830at 1842.408 kb on - strand, within GFF4830at 1842.728 kb on + strand, within GFF4830

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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1,839,242 + +0.2
1,839,713 + GFF4827 0.62 +0.3
1,839,713 + GFF4827 0.62 -0.5
1,839,917 + GFF4827 0.90 -0.3
1,839,918 - GFF4827 0.90 -1.4
1,839,947 + +0.3
1,839,948 - -0.6
1,839,948 - -0.4
1,839,948 - -0.9
1,840,472 - GFF4828 0.21 -1.6
1,840,717 + GFF4828 0.36 -0.3
1,840,739 - GFF4828 0.37 +0.7
1,840,759 + GFF4828 0.39 -0.8
1,840,760 - GFF4828 0.39 -0.2
1,840,760 - GFF4828 0.39 +0.1
1,840,768 + GFF4828 0.39 +0.1
1,840,768 + GFF4828 0.39 +0.2
1,840,768 + GFF4828 0.39 +0.4
1,840,769 - GFF4828 0.39 +0.5
1,840,834 + GFF4828 0.43 +0.6
1,840,834 + GFF4828 0.43 -1.2
1,840,834 + GFF4828 0.43 -0.1
1,840,834 + GFF4828 0.43 -0.5
1,840,835 - GFF4828 0.43 -0.4
1,840,835 - GFF4828 0.43 -1.9
1,840,835 - GFF4828 0.43 -0.1
1,840,835 - GFF4828 0.43 +1.1
1,840,891 + GFF4828 0.47 -0.6
1,840,892 - GFF4828 0.47 -0.4
1,840,892 - GFF4828 0.47 +0.0
1,841,197 + GFF4828 0.66 -0.7
1,841,198 - GFF4828 0.66 -0.4
1,841,260 + GFF4828 0.70 -0.3
1,841,260 + GFF4828 0.70 +0.1
1,841,261 - GFF4828 0.70 -0.6
1,841,261 - GFF4828 0.70 +0.2
1,841,261 - GFF4828 0.70 +1.3
1,841,261 - GFF4828 0.70 -0.2
1,841,261 - GFF4828 0.70 -0.5
1,841,818 - GFF4829 0.14 +0.4
1,842,188 - +0.3
1,842,266 + -0.4
1,842,266 + -0.4
1,842,266 + +0.4
1,842,266 + +0.3
1,842,267 - +1.7
1,842,338 + GFF4830 0.14 +1.6
1,842,408 - GFF4830 0.21 -0.2
1,842,728 + GFF4830 0.56 +0.2

Or see this region's nucleotide sequence