Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4493

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
1,417,709	-				+0.8
1,417,889	+				+0.6
1,417,890	-				-0.2
1,417,890	-				-0.1
1,418,096	+		GFF4492	0.31	-0.2
1,418,096	+		GFF4492	0.31	-0.3
1,418,096	+		GFF4492	0.31	-0.7
1,418,096	+		GFF4492	0.31	-0.2
1,418,097	-		GFF4492	0.31	+1.2
1,418,097	-		GFF4492	0.31	-0.2
1,418,097	-		GFF4492	0.31	-0.5
1,418,097	-		GFF4492	0.31	+0.4
1,418,150	+		GFF4492	0.39	+0.9
1,418,150	+		GFF4492	0.39	+0.1
1,418,150	+		GFF4492	0.39	+0.7
1,418,150	+		GFF4492	0.39	+0.0
1,418,150	+		GFF4492	0.39	-0.3
1,418,151	-		GFF4492	0.39	+0.6
1,418,151	-		GFF4492	0.39	-1.3
1,418,151	-		GFF4492	0.39	+0.4
1,418,151	-		GFF4492	0.39	-0.0
1,418,174	+		GFF4492	0.42	-1.7
1,418,175	-		GFF4492	0.42	-0.0
1,418,190	-		GFF4492	0.45	+0.4
1,418,190	-		GFF4492	0.45	-0.3
1,418,211	-		GFF4492	0.48	+0.2
1,418,282	-		GFF4492	0.58	-0.4
1,418,339	+		GFF4492	0.66	-0.1
1,418,339	+		GFF4492	0.66	+0.1
1,418,339	+		GFF4492	0.66	-0.3
1,418,446	+		GFF4492	0.81	-1.2
1,418,567	+				+0.2
1,418,568	-				+0.8
1,418,568	-				-0.5
1,418,809	+		GFF4493	0.11	-0.8
1,418,810	-		GFF4493	0.11	-1.6
1,418,956	+		GFF4493	0.23	-1.0
1,418,956	+		GFF4493	0.23	-1.0
1,418,956	+		GFF4493	0.23	-1.4
1,418,956	+		GFF4493	0.23	-0.8
1,419,262	+		GFF4493	0.47	-1.4
1,419,262	+		GFF4493	0.47	-1.4
1,419,263	-		GFF4493	0.47	-0.4
1,419,379	+		GFF4493	0.56	-1.2
1,419,380	-		GFF4493	0.56	+0.6
1,419,380	-		GFF4493	0.56	-0.6
1,419,439	+		GFF4493	0.61	-2.1
1,419,439	+		GFF4493	0.61	-1.2
1,419,439	+		GFF4493	0.61	-0.4
1,419,440	-		GFF4493	0.61	-0.9
1,419,440	-		GFF4493	0.61	-1.4
1,419,440	-		GFF4493	0.61	-0.0
1,419,440	-		GFF4493	0.61	-0.7
1,419,683	-		GFF4493	0.80	-2.8
1,419,916	+				-0.6
1,419,916	+				-0.2
1,419,917	-				-0.6
1,419,917	-				+0.6
1,420,114	+		GFF4494	0.13	+0.2
1,420,114	+		GFF4494	0.13	+0.1
1,420,114	+		GFF4494	0.13	-0.5
1,420,114	+		GFF4494	0.13	+0.7
1,420,115	-		GFF4494	0.13	-0.5
1,420,115	-		GFF4494	0.13	-0.4
1,420,115	-		GFF4494	0.13	-1.0
1,420,123	+		GFF4494	0.14	-0.0
1,420,124	-		GFF4494	0.14	-0.2
1,420,192	+		GFF4494	0.21	-0.2
1,420,192	+		GFF4494	0.21	+0.2
1,420,192	+		GFF4494	0.21	+0.6
1,420,286	-		GFF4494	0.29	-1.0
1,420,504	+		GFF4494	0.49	+1.0
1,420,504	+		GFF4494	0.49	+0.1
1,420,505	-		GFF4494	0.49	+0.4
1,420,505	-		GFF4494	0.49	-1.0
1,420,540	+		GFF4494	0.53	+0.7
1,420,541	-		GFF4494	0.53	-0.5
1,420,541	-		GFF4494	0.53	+0.6
1,420,627	+		GFF4494	0.61	-0.0
1,420,628	-		GFF4494	0.61	-1.2
1,420,628	-		GFF4494	0.61	+0.9
1,420,708	+		GFF4494	0.68	+0.1
1,420,709	-		GFF4494	0.68	+0.6
1,420,709	-		GFF4494	0.68	+0.2
1,420,709	-		GFF4494	0.68	+0.8
1,420,709	-		GFF4494	0.68	+0.9
1,420,870	+		GFF4494	0.83	+0.3
1,420,871	-		GFF4494	0.83	-0.3
1,420,871	-		GFF4494	0.83	-0.4
1,420,871	-		GFF4494	0.83	-1.1
1,420,871	-		GFF4494	0.83	+0.1
1,420,897	+		GFF4494	0.85	+0.7
1,420,898	-		GFF4494	0.86	-0.2
1,420,898	-		GFF4494	0.86	-0.3
1,420,898	-		GFF4494	0.86	-0.6