Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4414

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
1,344,773	+				-0.7
1,344,773	+				-0.2
1,344,773	+				+0.0
1,344,777	+				+0.5
1,344,777	+				+0.3
1,344,827	+				+1.2
1,344,827	+				+0.0
1,344,828	-				-1.1
1,344,992	+		GFF4413	0.26	+0.2
1,344,992	+		GFF4413	0.26	+0.0
1,344,992	+		GFF4413	0.26	+0.4
1,344,993	-		GFF4413	0.27	-0.3
1,344,993	-		GFF4413	0.27	-0.2
1,344,993	-		GFF4413	0.27	+0.5
1,344,993	-		GFF4413	0.27	-0.5
1,344,993	-		GFF4413	0.27	+0.1
1,344,993	-		GFF4413	0.27	-0.7
1,345,223	+		GFF4413	0.53	+0.1
1,345,404	-		GFF4413	0.74	-0.1
1,345,413	-		GFF4413	0.75	-0.1
1,345,651	-				-1.4
1,345,904	-		GFF4414	0.20	+0.1
1,346,785	-		GFF4414	0.81	-0.2
1,346,905	+		GFF4414	0.90	+0.8
1,346,906	-		GFF4414	0.90	+1.0
1,346,906	-		GFF4414	0.90	-0.2
1,346,906	-		GFF4414	0.90	+0.1
1,346,906	-		GFF4414	0.90	-0.1
1,346,906	-		GFF4414	0.90	+0.1
1,347,224	+				+0.3
1,347,224	+				+1.4
1,347,267	-		GFF4415	0.12	-0.3
1,347,267	-		GFF4415	0.12	-0.0
1,347,488	+		GFF4415	0.31	+0.4
1,347,489	-		GFF4415	0.31	-0.2
1,347,506	+		GFF4415	0.32	-0.1
1,347,507	-		GFF4415	0.32	+0.0
1,347,686	+		GFF4415	0.47	+0.1
1,347,686	+		GFF4415	0.47	+0.2
1,347,687	-		GFF4415	0.47	+0.8
1,347,687	-		GFF4415	0.47	+0.0
1,347,807	-		GFF4415	0.57	-0.5
1,348,049	-		GFF4415	0.77	-0.2