Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4147

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4145 and GFF4146 are separated by 72 nucleotidesGFF4146 and GFF4147 are separated by 175 nucleotides GFF4145 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,055,210 to 1,056,094 GFF4145 GFF4146 - hypothetical protein, at 1,056,167 to 1,056,283 GFF4146 GFF4147 - Isocitrate lyase (EC 4.1.3.1), at 1,056,459 to 1,057,790 GFF4147 Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1055.604 kb on + strand, within GFF4145at 1055.604 kb on + strand, within GFF4145at 1055.604 kb on + strand, within GFF4145at 1055.604 kb on + strand, within GFF4145at 1055.604 kb on + strand, within GFF4145at 1055.605 kb on - strand, within GFF4145at 1055.605 kb on - strand, within GFF4145at 1055.605 kb on - strand, within GFF4145at 1055.669 kb on + strand, within GFF4145at 1055.976 kb on + strand, within GFF4145at 1056.075 kb on + strandat 1056.075 kb on + strandat 1056.075 kb on + strandat 1056.076 kb on - strandat 1056.076 kb on - strandat 1056.076 kb on - strandat 1056.076 kb on - strandat 1056.076 kb on - strandat 1056.098 kb on + strandat 1056.098 kb on + strandat 1056.098 kb on + strandat 1056.114 kb on + strandat 1056.114 kb on + strandat 1056.114 kb on + strandat 1056.348 kb on + strandat 1056.355 kb on + strandat 1056.376 kb on + strandat 1056.376 kb on + strandat 1056.376 kb on + strandat 1056.377 kb on - strandat 1056.385 kb on + strandat 1056.453 kb on - strandat 1056.453 kb on - strandat 1056.675 kb on + strand, within GFF4147at 1056.675 kb on + strand, within GFF4147at 1056.676 kb on - strand, within GFF4147at 1056.676 kb on - strand, within GFF4147at 1056.676 kb on - strand, within GFF4147at 1056.676 kb on - strand, within GFF4147at 1056.747 kb on + strand, within GFF4147at 1056.747 kb on + strand, within GFF4147at 1056.747 kb on + strand, within GFF4147at 1056.747 kb on + strand, within GFF4147at 1056.747 kb on + strand, within GFF4147at 1056.747 kb on + strand, within GFF4147at 1056.748 kb on - strand, within GFF4147at 1056.748 kb on - strand, within GFF4147at 1056.748 kb on - strand, within GFF4147at 1056.748 kb on - strand, within GFF4147at 1056.798 kb on + strand, within GFF4147at 1056.798 kb on + strand, within GFF4147at 1056.798 kb on + strand, within GFF4147at 1056.798 kb on + strand, within GFF4147at 1056.798 kb on + strand, within GFF4147at 1056.799 kb on - strand, within GFF4147at 1056.823 kb on - strand, within GFF4147at 1056.930 kb on + strand, within GFF4147at 1057.317 kb on + strand, within GFF4147at 1057.317 kb on + strand, within GFF4147at 1057.317 kb on + strand, within GFF4147at 1057.317 kb on + strand, within GFF4147at 1057.318 kb on - strand, within GFF4147at 1057.318 kb on - strand, within GFF4147at 1057.428 kb on + strand, within GFF4147at 1057.429 kb on - strand, within GFF4147at 1057.429 kb on - strand, within GFF4147at 1057.429 kb on - strand, within GFF4147at 1057.515 kb on + strand, within GFF4147at 1057.515 kb on + strand, within GFF4147at 1057.515 kb on + strand, within GFF4147at 1057.515 kb on + strand, within GFF4147at 1057.516 kb on - strand, within GFF4147at 1057.521 kb on + strand, within GFF4147at 1057.521 kb on + strand, within GFF4147at 1057.522 kb on - strand, within GFF4147at 1057.522 kb on - strand, within GFF4147at 1057.522 kb on - strand, within GFF4147at 1057.588 kb on - strand, within GFF4147at 1057.588 kb on - strand, within GFF4147at 1057.588 kb on - strand, within GFF4147at 1057.588 kb on - strand, within GFF4147at 1057.663 kb on - strandat 1057.663 kb on - strandat 1057.663 kb on - strandat 1057.701 kb on + strandat 1057.767 kb on - strandat 1057.914 kb on - strandat 1057.914 kb on - strandat 1057.914 kb on - strandat 1057.914 kb on - strandat 1058.174 kb on + strandat 1058.212 kb on + strandat 1058.212 kb on + strandat 1058.212 kb on + strandat 1058.213 kb on - strandat 1058.213 kb on - strandat 1058.213 kb on - strandat 1058.213 kb on - strandat 1058.215 kb on + strandat 1058.215 kb on + strandat 1058.215 kb on + strandat 1058.215 kb on + strandat 1058.215 kb on + strandat 1058.215 kb on + strandat 1058.215 kb on + strandat 1058.215 kb on + strandat 1058.225 kb on - strandat 1058.225 kb on - strandat 1058.264 kb on + strandat 1058.277 kb on + strandat 1058.278 kb on + strandat 1058.278 kb on - strandat 1058.278 kb on - strandat 1058.278 kb on - strandat 1058.278 kb on - strandat 1058.278 kb on - strandat 1058.373 kb on + strandat 1058.373 kb on + strandat 1058.373 kb on + strandat 1058.373 kb on + strandat 1058.374 kb on - strandat 1058.374 kb on - strandat 1058.399 kb on + strandat 1058.399 kb on + strandat 1058.400 kb on - strandat 1058.400 kb on - strandat 1058.400 kb on - strandat 1058.400 kb on - strandat 1058.400 kb on - strandat 1058.400 kb on - strandat 1058.449 kb on + strandat 1058.449 kb on + strandat 1058.449 kb on + strandat 1058.449 kb on + strandat 1058.450 kb on - strandat 1058.450 kb on - strandat 1058.450 kb on - strandat 1058.491 kb on + strandat 1058.497 kb on + strandat 1058.497 kb on + strandat 1058.497 kb on + strandat 1058.497 kb on + strandat 1058.497 kb on + strandat 1058.497 kb on + strandat 1058.498 kb on - strandat 1058.498 kb on - strandat 1058.640 kb on - strandat 1058.640 kb on - strandat 1058.652 kb on - strandat 1058.713 kb on + strandat 1058.714 kb on - strandat 1058.714 kb on - strandat 1058.763 kb on + strandat 1058.778 kb on + strandat 1058.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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1,055,604 + GFF4145 0.45 -0.4
1,055,604 + GFF4145 0.45 +0.8
1,055,604 + GFF4145 0.45 +0.2
1,055,604 + GFF4145 0.45 +0.0
1,055,604 + GFF4145 0.45 +1.1
1,055,605 - GFF4145 0.45 +0.4
1,055,605 - GFF4145 0.45 -1.5
1,055,605 - GFF4145 0.45 -0.5
1,055,669 + GFF4145 0.52 +0.2
1,055,976 + GFF4145 0.87 +0.3
1,056,075 + -1.6
1,056,075 + +0.6
1,056,075 + -0.4
1,056,076 - -0.5
1,056,076 - +0.0
1,056,076 - +0.1
1,056,076 - +0.4
1,056,076 - +0.5
1,056,098 + +0.7
1,056,098 + +0.4
1,056,098 + +0.6
1,056,114 + +0.3
1,056,114 + +0.2
1,056,114 + +0.6
1,056,348 + +0.1
1,056,355 + -1.6
1,056,376 + -0.9
1,056,376 + -0.2
1,056,376 + -1.3
1,056,377 - -2.1
1,056,385 + -0.1
1,056,453 - -2.8
1,056,453 - -3.8
1,056,675 + GFF4147 0.16 -1.8
1,056,675 + GFF4147 0.16 -2.4
1,056,676 - GFF4147 0.16 -3.1
1,056,676 - GFF4147 0.16 -1.1
1,056,676 - GFF4147 0.16 -2.9
1,056,676 - GFF4147 0.16 -1.6
1,056,747 + GFF4147 0.22 -2.9
1,056,747 + GFF4147 0.22 -1.9
1,056,747 + GFF4147 0.22 -2.5
1,056,747 + GFF4147 0.22 -1.8
1,056,747 + GFF4147 0.22 -1.2
1,056,747 + GFF4147 0.22 -3.5
1,056,748 - GFF4147 0.22 -1.0
1,056,748 - GFF4147 0.22 -3.8
1,056,748 - GFF4147 0.22 -3.0
1,056,748 - GFF4147 0.22 -2.7
1,056,798 + GFF4147 0.25 -4.6
1,056,798 + GFF4147 0.25 -2.0
1,056,798 + GFF4147 0.25 -1.2
1,056,798 + GFF4147 0.25 -2.2
1,056,798 + GFF4147 0.25 -1.7
1,056,799 - GFF4147 0.26 -4.0
1,056,823 - GFF4147 0.27 -3.6
1,056,930 + GFF4147 0.35 -2.2
1,057,317 + GFF4147 0.64 -3.1
1,057,317 + GFF4147 0.64 -3.7
1,057,317 + GFF4147 0.64 -3.1
1,057,317 + GFF4147 0.64 -1.7
1,057,318 - GFF4147 0.64 -0.2
1,057,318 - GFF4147 0.64 -3.6
1,057,428 + GFF4147 0.73 -2.2
1,057,429 - GFF4147 0.73 -0.5
1,057,429 - GFF4147 0.73 -1.1
1,057,429 - GFF4147 0.73 -2.3
1,057,515 + GFF4147 0.79 -2.9
1,057,515 + GFF4147 0.79 -3.7
1,057,515 + GFF4147 0.79 -2.1
1,057,515 + GFF4147 0.79 -1.1
1,057,516 - GFF4147 0.79 -1.9
1,057,521 + GFF4147 0.80 -2.3
1,057,521 + GFF4147 0.80 -2.7
1,057,522 - GFF4147 0.80 -2.5
1,057,522 - GFF4147 0.80 -3.3
1,057,522 - GFF4147 0.80 -2.0
1,057,588 - GFF4147 0.85 -2.2
1,057,588 - GFF4147 0.85 -3.2
1,057,588 - GFF4147 0.85 -1.0
1,057,588 - GFF4147 0.85 -2.1
1,057,663 - -1.9
1,057,663 - -2.7
1,057,663 - -2.1
1,057,701 + -2.8
1,057,767 - -1.6
1,057,914 - +0.0
1,057,914 - +0.0
1,057,914 - +0.3
1,057,914 - -0.1
1,058,174 + +0.1
1,058,212 + +0.6
1,058,212 + -1.6
1,058,212 + +0.6
1,058,213 - +0.0
1,058,213 - -0.3
1,058,213 - -0.4
1,058,213 - +1.6
1,058,215 + +0.1
1,058,215 + -0.4
1,058,215 + -0.2
1,058,215 + -0.5
1,058,215 + -0.4
1,058,215 + +0.1
1,058,215 + -0.1
1,058,215 + -0.1
1,058,225 - +0.4
1,058,225 - -0.6
1,058,264 + +0.2
1,058,277 + +0.6
1,058,278 + +0.2
1,058,278 - -0.5
1,058,278 - +0.2
1,058,278 - -0.7
1,058,278 - +0.1
1,058,278 - +0.0
1,058,373 + +0.1
1,058,373 + +0.4
1,058,373 + +0.9
1,058,373 + +0.1
1,058,374 - +1.1
1,058,374 - -0.1
1,058,399 + -1.5
1,058,399 + -0.1
1,058,400 - +0.2
1,058,400 - -0.1
1,058,400 - +0.1
1,058,400 - -0.0
1,058,400 - -0.8
1,058,400 - +0.5
1,058,449 + +0.1
1,058,449 + -0.3
1,058,449 + -0.2
1,058,449 + -0.1
1,058,450 - +0.3
1,058,450 - +0.9
1,058,450 - +0.5
1,058,491 + -0.1
1,058,497 + +0.3
1,058,497 + +0.1
1,058,497 + -0.2
1,058,497 + -0.1
1,058,497 + -0.0
1,058,497 + +0.1
1,058,498 - -0.0
1,058,498 - +0.1
1,058,640 - -0.1
1,058,640 - -0.2
1,058,652 - +0.0
1,058,713 + -0.6
1,058,714 - +0.5
1,058,714 - -0.4
1,058,763 + -0.5
1,058,778 + -0.2
1,058,779 - +0.2

Or see this region's nucleotide sequence