Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3913 and GFF3914 are separated by 267 nucleotides GFF3914 and GFF3915 are separated by 150 nucleotides GFF3915 and GFF3916 are separated by 46 nucleotides
GFF3913 - hypothetical protein, at 826,987 to 827,136
GFF3913
GFF3914 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 827,404 to 827,967
GFF3914
GFF3915 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 828,118 to 829,707
GFF3915
GFF3916 - Acetate permease ActP (cation/acetate symporter), at 829,754 to 831,451
GFF3916
Position (kb) 828
829
830 Strain fitness (log2 ratio) -1
0
1 at 827.138 kb on - strand at 827.207 kb on - strand at 827.317 kb on + strand at 827.329 kb on - strand at 827.329 kb on - strand at 827.418 kb on + strand at 827.418 kb on + strand at 827.419 kb on - strand at 827.419 kb on - strand at 827.419 kb on - strand at 827.575 kb on + strand, within GFF3914 at 827.575 kb on + strand, within GFF3914 at 827.575 kb on + strand, within GFF3914 at 827.575 kb on + strand, within GFF3914 at 827.575 kb on + strand, within GFF3914 at 827.576 kb on - strand, within GFF3914 at 827.576 kb on - strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.609 kb on - strand, within GFF3914 at 827.609 kb on - strand, within GFF3914 at 827.609 kb on - strand, within GFF3914 at 827.872 kb on + strand, within GFF3914 at 827.873 kb on - strand, within GFF3914 at 827.873 kb on - strand, within GFF3914 at 828.103 kb on + strand at 828.154 kb on + strand at 828.155 kb on - strand at 828.155 kb on - strand at 828.487 kb on + strand, within GFF3915 at 828.487 kb on + strand, within GFF3915 at 828.487 kb on + strand, within GFF3915 at 828.487 kb on + strand, within GFF3915 at 828.487 kb on + strand, within GFF3915 at 828.487 kb on + strand, within GFF3915 at 828.488 kb on - strand, within GFF3915 at 828.488 kb on - strand, within GFF3915 at 828.488 kb on - strand, within GFF3915 at 828.488 kb on - strand, within GFF3915 at 828.488 kb on - strand, within GFF3915 at 828.488 kb on - strand, within GFF3915 at 828.488 kb on - strand, within GFF3915 at 828.488 kb on - strand, within GFF3915 at 828.805 kb on + strand, within GFF3915 at 828.805 kb on + strand, within GFF3915 at 828.806 kb on - strand, within GFF3915 at 828.806 kb on - strand, within GFF3915 at 828.806 kb on - strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.890 kb on - strand, within GFF3915 at 828.890 kb on - strand, within GFF3915 at 829.403 kb on - strand, within GFF3915 at 829.597 kb on + strand at 829.597 kb on + strand at 829.597 kb on + strand at 829.598 kb on - strand at 829.598 kb on - strand at 829.598 kb on - strand at 829.598 kb on - strand at 829.917 kb on + strand at 829.918 kb on - strand at 829.918 kb on - strand at 830.131 kb on - strand, within GFF3916 at 830.250 kb on + strand, within GFF3916 at 830.250 kb on + strand, within GFF3916 at 830.251 kb on - strand, within GFF3916 at 830.251 kb on - strand, within GFF3916 at 830.251 kb on - strand, within GFF3916 at 830.251 kb on - strand, within GFF3916 at 830.487 kb on + strand, within GFF3916 at 830.487 kb on + strand, within GFF3916 at 830.487 kb on + strand, within GFF3916 at 830.487 kb on + strand, within GFF3916 at 830.488 kb on - strand, within GFF3916 at 830.488 kb on - strand, within GFF3916 at 830.488 kb on - strand, within GFF3916 at 830.493 kb on + strand, within GFF3916
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 827,138 - -0.0 827,207 - -0.7 827,317 + -0.3 827,329 - +0.5 827,329 - +0.3 827,418 + -0.3 827,418 + -0.7 827,419 - +0.5 827,419 - -0.7 827,419 - +0.2 827,575 + GFF3914 0.30 -0.1 827,575 + GFF3914 0.30 +0.8 827,575 + GFF3914 0.30 -0.6 827,575 + GFF3914 0.30 -0.2 827,575 + GFF3914 0.30 +0.7 827,576 - GFF3914 0.30 -0.4 827,576 - GFF3914 0.30 -1.0 827,608 + GFF3914 0.36 -0.2 827,608 + GFF3914 0.36 +0.4 827,608 + GFF3914 0.36 -0.5 827,608 + GFF3914 0.36 -0.2 827,608 + GFF3914 0.36 +0.8 827,608 + GFF3914 0.36 -0.3 827,609 - GFF3914 0.36 -0.6 827,609 - GFF3914 0.36 +0.5 827,609 - GFF3914 0.36 +0.4 827,872 + GFF3914 0.83 -0.3 827,873 - GFF3914 0.83 +1.6 827,873 - GFF3914 0.83 +0.6 828,103 + -0.6 828,154 + -0.2 828,155 - -0.6 828,155 - +0.8 828,487 + GFF3915 0.23 -0.4 828,487 + GFF3915 0.23 -0.3 828,487 + GFF3915 0.23 -0.2 828,487 + GFF3915 0.23 +0.4 828,487 + GFF3915 0.23 +0.1 828,487 + GFF3915 0.23 -0.5 828,488 - GFF3915 0.23 -0.4 828,488 - GFF3915 0.23 -0.1 828,488 - GFF3915 0.23 +0.1 828,488 - GFF3915 0.23 -0.1 828,488 - GFF3915 0.23 -0.1 828,488 - GFF3915 0.23 -0.5 828,488 - GFF3915 0.23 -0.2 828,488 - GFF3915 0.23 -0.6 828,805 + GFF3915 0.43 -0.5 828,805 + GFF3915 0.43 +0.4 828,806 - GFF3915 0.43 -0.3 828,806 - GFF3915 0.43 -0.2 828,806 - GFF3915 0.43 -0.4 828,889 + GFF3915 0.48 -0.0 828,889 + GFF3915 0.48 +0.6 828,889 + GFF3915 0.48 +0.0 828,889 + GFF3915 0.48 +0.4 828,889 + GFF3915 0.48 -0.2 828,889 + GFF3915 0.48 -0.4 828,890 - GFF3915 0.49 -1.0 828,890 - GFF3915 0.49 -0.1 829,403 - GFF3915 0.81 -0.3 829,597 + -0.2 829,597 + -0.5 829,597 + +0.1 829,598 - -0.2 829,598 - -0.2 829,598 - -0.5 829,598 - -0.1 829,917 + +0.1 829,918 - +0.7 829,918 - +0.4 830,131 - GFF3916 0.22 +0.1 830,250 + GFF3916 0.29 -0.0 830,250 + GFF3916 0.29 -0.4 830,251 - GFF3916 0.29 +0.1 830,251 - GFF3916 0.29 -0.5 830,251 - GFF3916 0.29 +0.6 830,251 - GFF3916 0.29 +0.1 830,487 + GFF3916 0.43 -0.1 830,487 + GFF3916 0.43 -0.9 830,487 + GFF3916 0.43 +0.2 830,487 + GFF3916 0.43 +0.4 830,488 - GFF3916 0.43 -0.2 830,488 - GFF3916 0.43 +0.3 830,488 - GFF3916 0.43 +0.6 830,493 + GFF3916 0.44 -0.4
Or see this region's nucleotide sequence