Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3655

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3653 and GFF3654 overlap by 4 nucleotidesGFF3654 and GFF3655 are separated by 72 nucleotidesGFF3655 and GFF3656 are separated by 96 nucleotidesGFF3656 and GFF3657 are separated by 109 nucleotidesGFF3657 and GFF3658 are separated by 87 nucleotides GFF3653 - Molybdopterin biosynthesis molybdochelatase MogA, at 539,534 to 540,142 GFF3653 GFF3654 - FIG138315: Putative alpha helix protein, at 540,139 to 540,786 GFF3654 GFF3655 - TldE protein, part of TldE/TldD proteolytic complex, at 540,859 to 542,274 GFF3655 GFF3656 - Transamidase GatB domain protein, at 542,371 to 542,820 GFF3656 GFF3657 - SSU ribosomal protein S21p, at 542,930 to 543,142 GFF3657 GFF3658 - hypothetical protein, at 543,230 to 543,436 GFF3658 Position (kb) 540 541 542 543Strain fitness (log2 ratio) -2 -1 0 1at 540.057 kb on + strand, within GFF3653at 540.057 kb on + strand, within GFF3653at 540.057 kb on + strand, within GFF3653at 540.057 kb on + strand, within GFF3653at 540.058 kb on - strand, within GFF3653at 540.225 kb on - strand, within GFF3654at 540.754 kb on + strandat 540.754 kb on + strandat 540.755 kb on - strandat 540.755 kb on - strandat 540.755 kb on - strandat 540.755 kb on - strandat 540.761 kb on + strandat 540.762 kb on - strandat 540.762 kb on - strandat 540.800 kb on + strandat 540.800 kb on + strandat 540.800 kb on + strandat 540.801 kb on - strandat 540.801 kb on - strandat 540.801 kb on - strandat 540.801 kb on - strandat 540.801 kb on - strandat 540.843 kb on + strandat 540.843 kb on + strandat 540.843 kb on + strandat 540.843 kb on + strandat 540.843 kb on + strandat 540.844 kb on - strandat 540.844 kb on - strandat 540.844 kb on - strandat 540.849 kb on - strandat 540.919 kb on + strandat 541.097 kb on - strand, within GFF3655at 541.097 kb on - strand, within GFF3655at 541.246 kb on + strand, within GFF3655at 541.528 kb on + strand, within GFF3655at 541.529 kb on - strand, within GFF3655at 541.529 kb on - strand, within GFF3655at 541.529 kb on - strand, within GFF3655at 541.582 kb on + strand, within GFF3655at 541.687 kb on + strand, within GFF3655at 541.687 kb on + strand, within GFF3655at 541.888 kb on + strand, within GFF3655at 541.889 kb on - strand, within GFF3655at 541.903 kb on + strand, within GFF3655at 541.903 kb on + strand, within GFF3655at 541.903 kb on + strand, within GFF3655at 542.068 kb on + strand, within GFF3655at 542.068 kb on + strand, within GFF3655at 542.068 kb on + strand, within GFF3655at 542.068 kb on + strand, within GFF3655at 542.069 kb on - strand, within GFF3655at 542.069 kb on - strand, within GFF3655at 542.069 kb on - strand, within GFF3655at 542.069 kb on - strand, within GFF3655at 542.069 kb on - strand, within GFF3655at 542.069 kb on - strand, within GFF3655at 542.069 kb on - strand, within GFF3655at 542.084 kb on - strand, within GFF3655at 542.209 kb on + strandat 542.210 kb on - strandat 542.210 kb on - strandat 542.210 kb on - strandat 542.215 kb on + strandat 542.216 kb on - strandat 542.216 kb on - strandat 542.216 kb on - strandat 542.216 kb on - strandat 542.216 kb on - strandat 542.216 kb on - strandat 542.272 kb on + strandat 542.272 kb on + strandat 542.273 kb on - strandat 542.273 kb on - strandat 542.555 kb on + strand, within GFF3656at 542.555 kb on + strand, within GFF3656at 542.555 kb on + strand, within GFF3656at 542.555 kb on + strand, within GFF3656at 542.555 kb on + strand, within GFF3656at 542.555 kb on + strand, within GFF3656at 542.555 kb on + strand, within GFF3656at 542.555 kb on + strand, within GFF3656at 542.556 kb on - strand, within GFF3656at 542.556 kb on - strand, within GFF3656at 542.934 kb on + strandat 542.934 kb on + strandat 542.935 kb on - strandat 542.935 kb on - strandat 542.935 kb on - strandat 543.274 kb on - strand, within GFF3658at 543.274 kb on - strand, within GFF3658

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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540,057 + GFF3653 0.86 -1.2
540,057 + GFF3653 0.86 -0.4
540,057 + GFF3653 0.86 +0.4
540,057 + GFF3653 0.86 -0.8
540,058 - GFF3653 0.86 -0.4
540,225 - GFF3654 0.13 +0.6
540,754 + +0.6
540,754 + -0.2
540,755 - -0.3
540,755 - -0.8
540,755 - -0.9
540,755 - +0.2
540,761 + -0.2
540,762 - -0.6
540,762 - -0.2
540,800 + +0.0
540,800 + +0.8
540,800 + -0.1
540,801 - -1.2
540,801 - -0.2
540,801 - -0.4
540,801 - +0.3
540,801 - -0.3
540,843 + -0.2
540,843 + +0.3
540,843 + +0.0
540,843 + -0.9
540,843 + -0.5
540,844 - -0.1
540,844 - -0.1
540,844 - -0.2
540,849 - -0.0
540,919 + -0.7
541,097 - GFF3655 0.17 -1.5
541,097 - GFF3655 0.17 -0.3
541,246 + GFF3655 0.27 -1.7
541,528 + GFF3655 0.47 +0.4
541,529 - GFF3655 0.47 +1.0
541,529 - GFF3655 0.47 -0.5
541,529 - GFF3655 0.47 -0.3
541,582 + GFF3655 0.51 -1.1
541,687 + GFF3655 0.58 -0.4
541,687 + GFF3655 0.58 -1.0
541,888 + GFF3655 0.73 -1.6
541,889 - GFF3655 0.73 -2.1
541,903 + GFF3655 0.74 -0.3
541,903 + GFF3655 0.74 -0.3
541,903 + GFF3655 0.74 -0.1
542,068 + GFF3655 0.85 -0.5
542,068 + GFF3655 0.85 -0.9
542,068 + GFF3655 0.85 -1.1
542,068 + GFF3655 0.85 -0.5
542,069 - GFF3655 0.85 -0.3
542,069 - GFF3655 0.85 +0.1
542,069 - GFF3655 0.85 -0.5
542,069 - GFF3655 0.85 -1.2
542,069 - GFF3655 0.85 -0.2
542,069 - GFF3655 0.85 -0.9
542,069 - GFF3655 0.85 -0.4
542,084 - GFF3655 0.87 -1.7
542,209 + -0.1
542,210 - -0.3
542,210 - -0.4
542,210 - -0.3
542,215 + -0.6
542,216 - -0.5
542,216 - +0.6
542,216 - -0.5
542,216 - -0.9
542,216 - -0.2
542,216 - -0.7
542,272 + +1.0
542,272 + -0.2
542,273 - +1.4
542,273 - -0.4
542,555 + GFF3656 0.41 -0.5
542,555 + GFF3656 0.41 +0.1
542,555 + GFF3656 0.41 +0.1
542,555 + GFF3656 0.41 -0.1
542,555 + GFF3656 0.41 -0.4
542,555 + GFF3656 0.41 +0.3
542,555 + GFF3656 0.41 +0.0
542,555 + GFF3656 0.41 -0.1
542,556 - GFF3656 0.41 -0.5
542,556 - GFF3656 0.41 -0.1
542,934 + -1.9
542,934 + -0.3
542,935 - -0.7
542,935 - -0.2
542,935 - +0.3
543,274 - GFF3658 0.21 +0.0
543,274 - GFF3658 0.21 -0.5

Or see this region's nucleotide sequence