Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3562 and GFF3563 overlap by 23 nucleotides GFF3563 and GFF3564 are separated by 103 nucleotides GFF3564 and GFF3565 are separated by 31 nucleotides GFF3565 and GFF3566 are separated by 135 nucleotides
GFF3562 - Dienelactone hydrolase family, at 453,960 to 454,886
GFF3562
GFF3563 - NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 454,864 to 455,499
GFF3563
GFF3564 - Transcriptional regulator, TetR family, at 455,603 to 456,184
GFF3564
GFF3565 - hypothetical protein, at 456,216 to 456,686
GFF3565
GFF3566 - 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF), at 456,822 to 457,763
GFF3566
Position (kb) 455
456
457 Strain fitness (log2 ratio) -1
0
1 at 454.617 kb on + strand, within GFF3562 at 454.617 kb on + strand, within GFF3562 at 454.617 kb on + strand, within GFF3562 at 454.618 kb on - strand, within GFF3562 at 454.621 kb on - strand, within GFF3562 at 454.621 kb on - strand, within GFF3562 at 454.722 kb on + strand, within GFF3562 at 454.722 kb on + strand, within GFF3562 at 454.723 kb on - strand, within GFF3562 at 454.723 kb on - strand, within GFF3562 at 454.755 kb on + strand, within GFF3562 at 454.755 kb on + strand, within GFF3562 at 455.084 kb on + strand, within GFF3563 at 455.084 kb on + strand, within GFF3563 at 455.084 kb on + strand, within GFF3563 at 455.085 kb on - strand, within GFF3563 at 455.331 kb on - strand, within GFF3563 at 455.529 kb on + strand at 455.530 kb on - strand at 455.530 kb on - strand at 455.530 kb on - strand at 455.544 kb on - strand at 455.753 kb on + strand, within GFF3564 at 455.753 kb on + strand, within GFF3564 at 455.753 kb on + strand, within GFF3564 at 455.753 kb on + strand, within GFF3564 at 455.753 kb on + strand, within GFF3564 at 455.753 kb on + strand, within GFF3564 at 455.754 kb on - strand, within GFF3564 at 455.804 kb on + strand, within GFF3564 at 455.804 kb on + strand, within GFF3564 at 455.805 kb on - strand, within GFF3564 at 455.894 kb on + strand, within GFF3564 at 455.894 kb on + strand, within GFF3564 at 455.894 kb on + strand, within GFF3564 at 455.894 kb on + strand, within GFF3564 at 455.894 kb on + strand, within GFF3564 at 455.894 kb on + strand, within GFF3564 at 455.894 kb on + strand, within GFF3564 at 455.895 kb on - strand, within GFF3564 at 455.895 kb on - strand, within GFF3564 at 455.895 kb on - strand, within GFF3564 at 455.895 kb on - strand, within GFF3564 at 455.895 kb on - strand, within GFF3564 at 456.150 kb on - strand at 456.256 kb on + strand at 456.472 kb on + strand, within GFF3565 at 456.472 kb on + strand, within GFF3565 at 456.472 kb on + strand, within GFF3565 at 456.472 kb on + strand, within GFF3565 at 456.472 kb on + strand, within GFF3565 at 456.473 kb on - strand, within GFF3565 at 456.484 kb on + strand, within GFF3565 at 456.484 kb on + strand, within GFF3565 at 456.484 kb on + strand, within GFF3565 at 456.538 kb on + strand, within GFF3565 at 456.656 kb on - strand at 456.656 kb on - strand at 456.723 kb on + strand at 456.724 kb on - strand at 456.756 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 454,617 + GFF3562 0.71 -0.0 454,617 + GFF3562 0.71 -0.2 454,617 + GFF3562 0.71 -0.4 454,618 - GFF3562 0.71 -0.0 454,621 - GFF3562 0.71 +1.0 454,621 - GFF3562 0.71 -0.2 454,722 + GFF3562 0.82 +0.4 454,722 + GFF3562 0.82 -0.3 454,723 - GFF3562 0.82 -0.4 454,723 - GFF3562 0.82 -0.9 454,755 + GFF3562 0.86 +0.8 454,755 + GFF3562 0.86 +0.2 455,084 + GFF3563 0.35 -0.3 455,084 + GFF3563 0.35 -0.3 455,084 + GFF3563 0.35 -0.3 455,085 - GFF3563 0.35 -0.9 455,331 - GFF3563 0.73 -0.1 455,529 + -0.0 455,530 - -0.1 455,530 - +1.2 455,530 - +0.2 455,544 - -0.1 455,753 + GFF3564 0.26 -0.5 455,753 + GFF3564 0.26 -0.0 455,753 + GFF3564 0.26 -0.0 455,753 + GFF3564 0.26 +0.1 455,753 + GFF3564 0.26 -0.0 455,753 + GFF3564 0.26 +0.4 455,754 - GFF3564 0.26 +0.1 455,804 + GFF3564 0.35 +0.1 455,804 + GFF3564 0.35 -0.4 455,805 - GFF3564 0.35 -0.9 455,894 + GFF3564 0.50 -0.2 455,894 + GFF3564 0.50 +0.6 455,894 + GFF3564 0.50 -0.6 455,894 + GFF3564 0.50 -0.3 455,894 + GFF3564 0.50 -0.2 455,894 + GFF3564 0.50 -1.3 455,894 + GFF3564 0.50 -0.5 455,895 - GFF3564 0.50 -0.0 455,895 - GFF3564 0.50 +0.4 455,895 - GFF3564 0.50 -0.2 455,895 - GFF3564 0.50 +0.0 455,895 - GFF3564 0.50 -0.4 456,150 - -0.1 456,256 + -0.8 456,472 + GFF3565 0.54 +0.8 456,472 + GFF3565 0.54 +0.0 456,472 + GFF3565 0.54 +0.2 456,472 + GFF3565 0.54 +0.1 456,472 + GFF3565 0.54 -0.3 456,473 - GFF3565 0.55 -0.6 456,484 + GFF3565 0.57 +0.4 456,484 + GFF3565 0.57 -0.4 456,484 + GFF3565 0.57 -0.3 456,538 + GFF3565 0.68 +0.1 456,656 - +0.7 456,656 - +0.3 456,723 + +1.4 456,724 - -0.4 456,756 + +0.3
Or see this region's nucleotide sequence