Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3393

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
276,399	+				-0.6
276,400	-				-0.3
276,536	+				+0.6
276,536	+				-1.2
276,536	+				-0.8
276,536	+				-1.0
276,536	+				-1.0
276,536	+				-0.5
276,708	+		GFF3392	0.30	-0.4
276,718	-		GFF3392	0.31	-0.3
277,355	+		GFF3393	0.12	-0.4
277,355	+		GFF3393	0.12	-0.5
277,356	-		GFF3393	0.12	-0.1
277,356	-		GFF3393	0.12	+0.2
277,736	+		GFF3393	0.38	-0.4
278,721	+				+0.6
278,721	+				+0.4
279,058	-		GFF3394	0.41	-0.2
279,058	-		GFF3394	0.41	+0.3