Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3131

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
7,375	+		GFF3129	0.64	-0.1
7,376	-		GFF3129	0.65	+1.1
7,376	-		GFF3129	0.65	-0.3
7,376	-		GFF3129	0.65	+0.0
7,839	+				-0.7
7,840	-				+0.2
7,840	-				+0.5
7,840	-				-0.4
7,840	-				-1.7
7,871	+				-0.3
8,179	-				-1.7
8,179	-				-0.1
8,191	+				+0.8
8,250	+				-0.6
8,330	+				-0.3
8,363	+				+0.8
8,363	+				+0.1
8,363	+				-0.1
8,364	-				+1.0
8,364	-				+0.4
8,492	-		GFF3131	0.23	-1.3
8,492	-		GFF3131	0.23	+0.0
8,492	-		GFF3131	0.23	+0.6
8,492	-		GFF3131	0.23	-0.0
8,676	+		GFF3131	0.57	-0.7
8,727	+		GFF3131	0.66	-0.9
8,728	-		GFF3131	0.66	-0.7
8,742	+		GFF3131	0.69	+0.2
8,742	+		GFF3131	0.69	-0.2
8,742	+		GFF3131	0.69	+0.5
8,742	+		GFF3131	0.69	-0.2
8,885	-				-0.3
8,885	-				-1.3
8,885	-				-0.6
8,885	-				-0.2
8,915	+				+1.6
8,916	-				+0.4
8,916	-				+0.4
8,916	-				+0.5
8,921	+				-0.5
8,921	+				-0.6
8,921	+				-0.2
8,921	+				-0.4
8,922	-				-2.4
8,922	-				-0.5
8,922	-				+0.4
8,922	-				-0.4
8,926	+				-0.2
8,926	+				+0.1
8,926	+				-1.0
8,927	-				+0.0
8,936	-				+0.1
8,976	+				+0.0
8,977	-				-0.1
8,986	+				+0.1
8,987	-				+0.6
8,989	+				+0.9
8,990	-				-0.1
8,990	-				-0.7
8,990	-				-0.6
8,990	-				-1.2
9,001	+				-1.0
9,001	+				-0.5
9,052	+				+0.7
9,052	+				-0.2
9,052	+				+2.6
9,053	-				-0.4
9,053	-				+0.5
9,053	-				-0.1
9,056	+				+0.1
9,056	+				-0.0
9,057	-				-0.7
9,118	+				-0.5
9,118	+				+0.4
9,487	+				-0.2
9,487	+				+0.4
9,488	-				-0.2
9,488	-				+1.1
9,659	+				-0.7
9,659	+				-0.3
9,659	+				+0.8
9,660	-				+0.3
9,660	-				+1.0
9,660	-				+0.1
9,660	-				+0.6
9,660	-				-0.4
9,759	+				+0.7
9,759	+				-0.5
9,759	+				-0.7
9,759	+				+0.1
9,759	+				-0.6
9,759	+				+0.3
9,760	-				+0.8
9,760	-				-0.6
9,891	-		GFF3133	0.15	-0.6
9,891	-		GFF3133	0.15	+1.6