Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3053 and GFF3054 are separated by 19 nucleotides GFF3054 and GFF3055 overlap by 1 nucleotides GFF3055 and GFF3056 are separated by 16 nucleotides
GFF3053 - Quinone oxidoreductase (EC 1.6.5.5), at 132,140 to 133,129
GFF3053
GFF3054 - Enoyl-CoA hydratase (EC 4.2.1.17), at 133,149 to 133,958
GFF3054
GFF3055 - L-carnitine dehydratase/bile acid-inducible protein F, at 133,958 to 135,148
GFF3055
GFF3056 - MmgE/PrpD family protein, at 135,165 to 136,535
GFF3056
Position (kb) 133
134
135
136 Strain fitness (log2 ratio) -1
0
1 at 133.510 kb on + strand, within GFF3054 at 133.613 kb on - strand, within GFF3054 at 133.943 kb on - strand at 133.962 kb on + strand at 134.433 kb on + strand, within GFF3055 at 134.529 kb on + strand, within GFF3055 at 134.529 kb on + strand, within GFF3055 at 134.530 kb on - strand, within GFF3055 at 134.530 kb on - strand, within GFF3055 at 134.530 kb on - strand, within GFF3055 at 134.530 kb on - strand, within GFF3055 at 134.784 kb on + strand, within GFF3055 at 134.961 kb on + strand, within GFF3055 at 134.961 kb on + strand, within GFF3055 at 134.962 kb on - strand, within GFF3055 at 135.533 kb on - strand, within GFF3056 at 135.533 kb on - strand, within GFF3056 at 135.713 kb on - strand, within GFF3056 at 136.072 kb on + strand, within GFF3056 at 136.073 kb on - strand, within GFF3056
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 133,510 + GFF3054 0.45 -0.6 133,613 - GFF3054 0.57 -0.3 133,943 - -1.5 133,962 + +0.4 134,433 + GFF3055 0.40 +0.2 134,529 + GFF3055 0.48 -0.3 134,529 + GFF3055 0.48 +0.9 134,530 - GFF3055 0.48 -0.7 134,530 - GFF3055 0.48 +0.3 134,530 - GFF3055 0.48 +0.0 134,530 - GFF3055 0.48 -0.0 134,784 + GFF3055 0.69 +1.2 134,961 + GFF3055 0.84 +1.0 134,961 + GFF3055 0.84 +1.0 134,962 - GFF3055 0.84 -0.1 135,533 - GFF3056 0.27 -1.1 135,533 - GFF3056 0.27 +0.4 135,713 - GFF3056 0.40 -0.1 136,072 + GFF3056 0.66 -0.0 136,073 - GFF3056 0.66 +0.6
Or see this region's nucleotide sequence